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Schema for knownGenePep
  Database: hg17    Primary Table: knownGenePep    Row Count: 37,428   Data last updated: 2005-06-04
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000409varchar(255) values Name of gene - same as in genePred
seq MVSSQKLEKPIEMGSSEPLPIADGDRR...longblob   Peptide sequence

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via knownGenePep.name)
      hg17.ccdsKgMap.geneId (via knownGenePep.name)
      hg17.ceBlastTab.query (via knownGenePep.name)
      hg17.dmBlastTab.query (via knownGenePep.name)
      hg17.drBlastTab.query (via knownGenePep.name)
      hg17.dupSpMrna.mrnaID (via knownGenePep.name)
      hg17.foldUtr3.name (via knownGenePep.name)
      hg17.foldUtr5.name (via knownGenePep.name)
      hg17.gladHumESDistance.query (via knownGenePep.name)
      hg17.gladHumESDistance.target (via knownGenePep.name)
      hg17.gnfAtlas2Distance.query (via knownGenePep.name)
      hg17.gnfAtlas2Distance.target (via knownGenePep.name)
      hg17.gnfU95Distance.query (via knownGenePep.name)
      hg17.gnfU95Distance.target (via knownGenePep.name)
      hg17.humanHprdP2P.query (via knownGenePep.name)
      hg17.humanHprdP2P.target (via knownGenePep.name)
      hg17.humanVidalP2P.query (via knownGenePep.name)
      hg17.humanVidalP2P.target (via knownGenePep.name)
      hg17.humanWankerP2P.query (via knownGenePep.name)
      hg17.humanWankerP2P.target (via knownGenePep.name)
      hg17.keggPathway.kgID (via knownGenePep.name)
      hg17.kgAlias.kgID (via knownGenePep.name)
      hg17.kgProtAlias.kgID (via knownGenePep.name)
      hg17.kgSpAlias.kgID (via knownGenePep.name)
      hg17.kgTargetAli.qName (via knownGenePep.name)
      hg17.kgXref.kgID (via knownGenePep.name)
      hg17.knownBlastTab.query (via knownGenePep.name)
      hg17.knownBlastTab.target (via knownGenePep.name)
      hg17.knownCanonical.transcript (via knownGenePep.name)
      hg17.knownExpDistance.query (via knownGenePep.name)
      hg17.knownExpDistance.target (via knownGenePep.name)
      hg17.knownGene.name (via knownGenePep.name)
      hg17.knownGeneLink.name (via knownGenePep.name)
      hg17.knownGeneMrna.name (via knownGenePep.name)
      hg17.knownIsoforms.transcript (via knownGenePep.name)
      hg17.knownToAllenBrain.name (via knownGenePep.name)
      hg17.knownToEnsembl.name (via knownGenePep.name)
      hg17.knownToGnf1h.name (via knownGenePep.name)
      hg17.knownToGnfAtlas2.name (via knownGenePep.name)
      hg17.knownToHInv.name (via knownGenePep.name)
      hg17.knownToHprd.name (via knownGenePep.name)
      hg17.knownToKeggEntrez.name (via knownGenePep.name)
      hg17.knownToLocusLink.name (via knownGenePep.name)
      hg17.knownToPfam.name (via knownGenePep.name)
      hg17.knownToRefSeq.name (via knownGenePep.name)
      hg17.knownToSuper.gene (via knownGenePep.name)
      hg17.knownToU133.name (via knownGenePep.name)
      hg17.knownToU133Plus2.name (via knownGenePep.name)
      hg17.knownToU95.name (via knownGenePep.name)
      hg17.knownToVisiGene.name (via knownGenePep.name)
      hg17.mmBlastTab.query (via knownGenePep.name)
      hg17.rankProp.query (via knownGenePep.name)
      hg17.rankProp.target (via knownGenePep.name)
      hg17.rnBlastTab.query (via knownGenePep.name)
      hg17.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
AB000409MVSSQKLEKPIEMGSSEPLPIADGDRRRKKKRRGRATDSLPGKFEDMYKLTSELLGEGAYAKVQGAVSLQNGKEYAVKIIEKQAGHSRSRVFREVETLYQCQGNKNILELIEFFEDDTRFYLVFEKLQ ...
AB000460MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000461MKVRLLRQLSAAAKVKAPSGLQGPPQAHQFISLLLEEYGALCQAARSISTFLGTLENEHLKKFQVTWELHNKHLFENLVFSEPLLQSNLPALVSQIRLGTTTHDTCSEDTYSTLLQRYQRSEEELRRV ...
AB000463MAAEEMHWPVPMKAIGAQNLLTMPGGVAKAGYLHKKGGTQLQLLKWPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRQPRPQPAQALSQTEAGP
AB000781MRSVAHAAIFQSLCITPDTLAFNTSGNVCFMEQLSDDPEGAFVPPEFDVTGNTFEAHIYSLGATLKAALEYVAEPTLEPRLSQDLEALLSRMQAEDPGDRPDLESIIALCEEKLQLTSSCRVCRSLSA ...
AB000815MADQRMDISSTISDFMSPGPTDLLSSSLGTSGVDCNRKRKGSSTDYQESMDTDKDDPHGRLEYTEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA ...
AB001025MAEGGEGGEDEIQFLRTEDEVVLQCIATIHKEQRKFCLAAEGLGNRLCFLEPTSEAKYIPPDLCVCNFVLEQSLSVRALQEMLANTGENGGEGAAQGGGHRTLLYGHAVLLRHSFSGMYLTCLTTSRS ...
AB001328MRAILILYFTNFISWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVTSVSSINDLTDHNHDGTPDSLPVHVVLSLIGLALIALGTGGIKPCVSAFGGDQFEEGQEKQRN ...
AB001535MKQVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIHPTGSFPAEYILDEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRLEKFISEQTKERGGVAIKIPIVCVVLEGGPGTLHTIDN ...
AB002292MENPEEAIYDDVPRENSDSEPDEMIYDDVENGDEGGNSSLEYGWSSSEFESYEEQSDSECKNGIPRSFLRSNHKKQLSHDLTRLKEHYEKKMRDLMASTVGVVEIQQLRQKHELKMQKLVKAAKDGTK ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.