Skip to main content
Schema for gladHumESDistance
  Database: hg17    Primary Table: gladHumESDistance    Row Count: 25,472,000   Data last updated: 2006-01-25
Format description: Distance between two genes in expression space.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query NM_002155varchar(255) Name of one gene
target NM_002155varchar(255) Name of other gene
distance 0float Distance in expression space, always >= 0

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via gladHumESDistance.query)
      hg17.ccdsKgMap.geneId (via gladHumESDistance.query)
      hg17.ceBlastTab.query (via gladHumESDistance.query)
      hg17.dmBlastTab.query (via gladHumESDistance.query)
      hg17.drBlastTab.query (via gladHumESDistance.query)
      hg17.dupSpMrna.mrnaID (via gladHumESDistance.query)
      hg17.foldUtr3.name (via gladHumESDistance.query)
      hg17.foldUtr5.name (via gladHumESDistance.query)
      hg17.gnfAtlas2Distance.query (via gladHumESDistance.query)
      hg17.gnfAtlas2Distance.target (via gladHumESDistance.query)
      hg17.gnfU95Distance.query (via gladHumESDistance.query)
      hg17.gnfU95Distance.target (via gladHumESDistance.query)
      hg17.humanHprdP2P.query (via gladHumESDistance.query)
      hg17.humanHprdP2P.target (via gladHumESDistance.query)
      hg17.humanVidalP2P.query (via gladHumESDistance.query)
      hg17.humanVidalP2P.target (via gladHumESDistance.query)
      hg17.humanWankerP2P.query (via gladHumESDistance.query)
      hg17.humanWankerP2P.target (via gladHumESDistance.query)
      hg17.keggPathway.kgID (via gladHumESDistance.query)
      hg17.kgAlias.kgID (via gladHumESDistance.query)
      hg17.kgProtAlias.kgID (via gladHumESDistance.query)
      hg17.kgSpAlias.kgID (via gladHumESDistance.query)
      hg17.kgTargetAli.qName (via gladHumESDistance.query)
      hg17.kgXref.kgID (via gladHumESDistance.query)
      hg17.knownBlastTab.query (via gladHumESDistance.query)
      hg17.knownBlastTab.target (via gladHumESDistance.query)
      hg17.knownCanonical.transcript (via gladHumESDistance.query)
      hg17.knownExpDistance.query (via gladHumESDistance.query)
      hg17.knownExpDistance.target (via gladHumESDistance.query)
      hg17.knownGene.name (via gladHumESDistance.query)
      hg17.knownGeneLink.name (via gladHumESDistance.query)
      hg17.knownGeneMrna.name (via gladHumESDistance.query)
      hg17.knownGenePep.name (via gladHumESDistance.query)
      hg17.knownIsoforms.transcript (via gladHumESDistance.query)
      hg17.knownToAllenBrain.name (via gladHumESDistance.query)
      hg17.knownToEnsembl.name (via gladHumESDistance.query)
      hg17.knownToGnf1h.name (via gladHumESDistance.query)
      hg17.knownToGnfAtlas2.name (via gladHumESDistance.query)
      hg17.knownToHInv.name (via gladHumESDistance.query)
      hg17.knownToHprd.name (via gladHumESDistance.query)
      hg17.knownToKeggEntrez.name (via gladHumESDistance.query)
      hg17.knownToLocusLink.name (via gladHumESDistance.query)
      hg17.knownToPfam.name (via gladHumESDistance.query)
      hg17.knownToRefSeq.name (via gladHumESDistance.query)
      hg17.knownToSuper.gene (via gladHumESDistance.query)
      hg17.knownToU133.name (via gladHumESDistance.query)
      hg17.knownToU133Plus2.name (via gladHumESDistance.query)
      hg17.knownToU95.name (via gladHumESDistance.query)
      hg17.knownToVisiGene.name (via gladHumESDistance.query)
      hg17.mmBlastTab.query (via gladHumESDistance.query)
      hg17.rankProp.query (via gladHumESDistance.query)
      hg17.rankProp.target (via gladHumESDistance.query)
      hg17.rnBlastTab.query (via gladHumESDistance.query)
      hg17.scBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.bioCycPathway.kgID (via gladHumESDistance.query)
      knownGeneV39.ceBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.dmBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.drBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.foldUtr3.name (via gladHumESDistance.query)
      knownGeneV39.foldUtr5.name (via gladHumESDistance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gladHumESDistance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gladHumESDistance.query)
      knownGeneV39.kgAlias.kgID (via gladHumESDistance.query)
      knownGeneV39.kgColor.kgID (via gladHumESDistance.query)
      knownGeneV39.kgProtAlias.kgID (via gladHumESDistance.query)
      knownGeneV39.kgSpAlias.kgID (via gladHumESDistance.query)
      knownGeneV39.kgTargetAli.qName (via gladHumESDistance.query)
      knownGeneV39.kgXref.kgID (via gladHumESDistance.query)
      knownGeneV39.knownAttrs.kgID (via gladHumESDistance.query)
      knownGeneV39.knownBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.knownBlastTab.target (via gladHumESDistance.query)
      knownGeneV39.knownCanonical.protein (via gladHumESDistance.query)
      knownGeneV39.knownCanonical.transcript (via gladHumESDistance.query)
      knownGeneV39.knownCds.name (via gladHumESDistance.query)
      knownGeneV39.knownGene.name (via gladHumESDistance.query)
      knownGeneV39.knownGeneMrna.name (via gladHumESDistance.query)
      knownGeneV39.knownGenePep.name (via gladHumESDistance.query)
      knownGeneV39.knownIsoforms.transcript (via gladHumESDistance.query)
      knownGeneV39.knownToEnsembl.name (via gladHumESDistance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gladHumESDistance.query)
      knownGeneV39.knownToHprd.name (via gladHumESDistance.query)
      knownGeneV39.knownToLocusLink.name (via gladHumESDistance.query)
      knownGeneV39.knownToMrna.name (via gladHumESDistance.query)
      knownGeneV39.knownToMrnaSingle.name (via gladHumESDistance.query)
      knownGeneV39.knownToMupit.name (via gladHumESDistance.query)
      knownGeneV39.knownToPfam.name (via gladHumESDistance.query)
      knownGeneV39.knownToRefSeq.name (via gladHumESDistance.query)
      knownGeneV39.knownToSuper.gene (via gladHumESDistance.query)
      knownGeneV39.knownToTag.name (via gladHumESDistance.query)
      knownGeneV39.knownToU133.name (via gladHumESDistance.query)
      knownGeneV39.knownToU95.name (via gladHumESDistance.query)
      knownGeneV39.knownToVisiGene.name (via gladHumESDistance.query)
      knownGeneV39.knownToWikipedia.name (via gladHumESDistance.query)
      knownGeneV39.mmBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.rnBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.scBlastTab.query (via gladHumESDistance.query)
      knownGeneV39.ucscScop.ucscId (via gladHumESDistance.query)

Sample Rows
 
querytargetdistance
NM_002155NM_0021550
NM_002155BC0328392.52575
NM_002155NM_0026203.10314
NM_002155NM_0012254.62
NM_002155NM_0333074.62
NM_002155U289794.62
NM_002155NM_0333064.62
NM_002155NM_0305765.38207
NM_002155NM_2068665.54232
NM_002155NM_2073366.32364

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.