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Schema for gnfAtlas2Distance
  Database: hg18    Primary Table: gnfAtlas2Distance    Row Count: 53,513,000   Data last updated: 2009-03-10
Format description: Distance between two genes in expression space.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query uc001azu.2varchar(255) Name of one gene
target uc001azv.2varchar(255) Name of other gene
distance 0float Distance in expression space, always >= 0

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      hg18.ccdsKgMap.geneId (via gnfAtlas2Distance.query)
      hg18.ceBlastTab.query (via gnfAtlas2Distance.query)
      hg18.dmBlastTab.query (via gnfAtlas2Distance.query)
      hg18.drBlastTab.query (via gnfAtlas2Distance.query)
      hg18.foldUtr3.name (via gnfAtlas2Distance.query)
      hg18.foldUtr5.name (via gnfAtlas2Distance.query)
      hg18.gnfU95Distance.query (via gnfAtlas2Distance.query)
      hg18.gnfU95Distance.target (via gnfAtlas2Distance.query)
      hg18.humanHprdP2P.query (via gnfAtlas2Distance.query)
      hg18.humanHprdP2P.target (via gnfAtlas2Distance.query)
      hg18.humanVidalP2P.query (via gnfAtlas2Distance.query)
      hg18.humanVidalP2P.target (via gnfAtlas2Distance.query)
      hg18.humanWankerP2P.query (via gnfAtlas2Distance.query)
      hg18.humanWankerP2P.target (via gnfAtlas2Distance.query)
      hg18.keggPathway.kgID (via gnfAtlas2Distance.query)
      hg18.kgAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgColor.kgID (via gnfAtlas2Distance.query)
      hg18.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgProtMap2.qName (via gnfAtlas2Distance.query)
      hg18.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      hg18.kgTargetAli.qName (via gnfAtlas2Distance.query)
      hg18.kgTxInfo.name (via gnfAtlas2Distance.query)
      hg18.kgXref.kgID (via gnfAtlas2Distance.query)
      hg18.knownBlastTab.query (via gnfAtlas2Distance.query)
      hg18.knownBlastTab.target (via gnfAtlas2Distance.query)
      hg18.knownCanonical.protein (via gnfAtlas2Distance.query)
      hg18.knownCanonical.transcript (via gnfAtlas2Distance.query)
      hg18.knownGene.name (via gnfAtlas2Distance.query)
      hg18.knownGeneMrna.name (via gnfAtlas2Distance.query)
      hg18.knownGenePep.name (via gnfAtlas2Distance.query)
      hg18.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      hg18.knownToAllenBrain.name (via gnfAtlas2Distance.query)
      hg18.knownToEnsembl.name (via gnfAtlas2Distance.query)
      hg18.knownToGnf1h.name (via gnfAtlas2Distance.query)
      hg18.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      hg18.knownToHInv.name (via gnfAtlas2Distance.query)
      hg18.knownToHprd.name (via gnfAtlas2Distance.query)
      hg18.knownToKeggEntrez.name (via gnfAtlas2Distance.query)
      hg18.knownToLocusLink.name (via gnfAtlas2Distance.query)
      hg18.knownToMupit.name (via gnfAtlas2Distance.query)
      hg18.knownToPfam.name (via gnfAtlas2Distance.query)
      hg18.knownToRefSeq.name (via gnfAtlas2Distance.query)
      hg18.knownToSuper.gene (via gnfAtlas2Distance.query)
      hg18.knownToTreefam.name (via gnfAtlas2Distance.query)
      hg18.knownToU133.name (via gnfAtlas2Distance.query)
      hg18.knownToU133Plus2.name (via gnfAtlas2Distance.query)
      hg18.knownToU95.name (via gnfAtlas2Distance.query)
      hg18.knownToVisiGene.name (via gnfAtlas2Distance.query)
      hg18.mmBlastTab.query (via gnfAtlas2Distance.query)
      hg18.rnBlastTab.query (via gnfAtlas2Distance.query)
      hg18.scBlastTab.query (via gnfAtlas2Distance.query)
      hg18.ucscScop.ucscId (via gnfAtlas2Distance.query)
      knownGeneV39.bioCycPathway.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.ceBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.dmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.drBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr3.name (via gnfAtlas2Distance.query)
      knownGeneV39.foldUtr5.name (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.query (via gnfAtlas2Distance.query)
      knownGeneV39.gnfAtlas2Distance.target (via gnfAtlas2Distance.query)
      knownGeneV39.kgAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgColor.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgProtAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgSpAlias.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.kgTargetAli.qName (via gnfAtlas2Distance.query)
      knownGeneV39.kgXref.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownAttrs.kgID (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.knownBlastTab.target (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.protein (via gnfAtlas2Distance.query)
      knownGeneV39.knownCanonical.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownCds.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGeneMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownGenePep.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownIsoforms.transcript (via gnfAtlas2Distance.query)
      knownGeneV39.knownToEnsembl.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToGnfAtlas2.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToHprd.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToLocusLink.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrna.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMrnaSingle.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToMupit.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToPfam.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToRefSeq.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToSuper.gene (via gnfAtlas2Distance.query)
      knownGeneV39.knownToTag.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU133.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToU95.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToVisiGene.name (via gnfAtlas2Distance.query)
      knownGeneV39.knownToWikipedia.name (via gnfAtlas2Distance.query)
      knownGeneV39.mmBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.rnBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.scBlastTab.query (via gnfAtlas2Distance.query)
      knownGeneV39.ucscScop.ucscId (via gnfAtlas2Distance.query)

Sample Rows
 
querytargetdistance
uc001azu.2uc001azv.20
uc001azu.2uc001azu.20
uc001azu.2uc009voz.10
uc001azu.2uc001azt.20
uc001azu.2uc003otj.10.531696
uc001azu.2uc003oti.10.531696
uc001azu.2uc010jyd.10.531696
uc001azu.2uc003oth.10.531696
uc001azu.2uc003otg.10.531696
uc001azu.2uc002bal.10.532177

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.