Skip to main content
Configure Image - Genome Browser V501
 
Image width:pixels
Label area width:characters
Text size:
Font:
Style:
Maximum track load time: seconds
Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Show move left/right limit buttons under image
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)
Enable pop-up when clicking items

Configure Tracks on UCSC Genome Browser: Zebrafish May 2017 (GRCz11/danRer11)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
BAC End Pairs BAC End Pairs
Assembly Assembly from Fragments
CHORI Clones CHORI zebrafish BAC library clone end placements (NCBI Clone DB unique_concordant)
     CHORI CH73     CHORI CH73 BAC library clone end placements, unique concordant
     CHORI CH211     CHORI CH211 BAC library clone end placements, unique concordant
     CHORI CH1073     CHORI CH1073 BAC library clone end placements, unique concordant
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Zebrafish RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Other mRNAs Non-Zebrafish mRNAs from GenBank
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
updated JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
-   Comparative Genomics    
ClinVar Lift Human ClinVar variants lifted to Zebrafish
Chicken Chain/Net Chicken (Mar. 2018 (GRCg6a/galGal6)), Chain and Net Alignments
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
mm10 ChainNet Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust