Human hg19 scaffold_24862:854,980-869,643 UCSC Genome Browser v501

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Configure Tracks on UCSC Genome Browser: Human Feb. 2009 (GRCh37/hg19)

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Hub: ENCODE DNA Trackhub

DNase-seq

Experiments by Ontology

vein

blood vessel, epithelium, vasculature, vein

vasculature

blood vessel, endocrine gland, epithelium, exocrine gland, liver, vasculature

vagina

uterus

blood vessel, epithelium, uterus, vasculature

urinary bladder

blood vessel, epithelium, urinary bladder, vasculature

unknown

tongue

mouth, tongue

thyroid gland

endocrine gland, thyroid gland

testis

gonad, testis

stomach

musculature of body, stomach

spleen

immune organ, spleen

spinal cord

small intestine

intestine, small intestine

skin of body

connective tissue, epithelium, skin of body

skeleton

bone element, skeleton

prostate gland

placenta

connective tissue, embryo, epithelium, extraembryonic component, placenta

penis

connective tissue, epithelium, penis, skin of body

pancreas

epithelium, exocrine gland, pancreas

musculature of body

arterial blood vessel, blood vessel, connective tissue, epithelium, esophagus, musculature of body, vasculature

mouth

connective tissue, mouth

mammary gland

epithelium, exocrine gland, mammary gland

lymphoid tissue

intestine, lymphoid tissue

lymph node

blood, bodily fluid, bone element, bone marrow, immune organ, lymph node

lung

connective tissue, epithelium, lung, vasculature

liver

connective tissue, endocrine gland, epithelium, exocrine gland, liver

limb

arterial blood vessel, blood vessel, bone element, connective tissue, limb, musculature of body, nerve, skeleton, skin of body, vasculature

large intestine

colon, epithelium, intestine, large intestine

kidney

blood vessel, epithelium, kidney, ureter, vasculature

intestine

colon, intestine, large intestine, musculature of body

immune organ

immune organ, spleen

heart

arterial blood vessel, blood vessel, connective tissue, epithelium, heart, musculature of body, pericardium, vasculature

gonad

epithelium, gonad, ovary, testis

eye

connective tissue, eye

extraembryonic component

exocrine gland

connective tissue, epithelium, exocrine gland, mammary gland, mouth

esophagus

epithelium, esophagus, musculature of body

epithelium

blood vessel, bone element, breast, connective tissue, epithelium, exocrine gland, extraembryonic component, eye, lymphatic vessel, mammary gland, nose, prostate gland, skin of body, vasculature

endocrine gland

adrenal gland, endocrine gland, epithelium, exocrine gland, immune organ, liver, thymus

embryo

embryo, extraembryonic component

connective tissue

connective tissue, extraembryonic component, lung, penis

colon

colon, epithelium, intestine, large intestine

bronchus

bronchus, connective tissue, epithelium, lung

breast

brain

blood vessel, brain, connective tissue, epithelium, vasculature

bone marrow

bone element, bone marrow, connective tissue, epithelium

bone element

bodily fluid

blood, bodily fluid

blood

blood, bodily fluid, bone element, bone marrow

arterial blood vessel

arterial blood vessel, blood vessel, connective tissue, epithelium, vasculature

adrenal gland

adrenal gland, endocrine gland

adipose tissue

adipose tissue, connective tissue

Histone ChIP-seq (by biosample)

Histone ChIP-seq (by biosample) WI38

Histone ChIP-seq (by biosample) WERI-Rb-1

Histone ChIP-seq (by biosample) VCaP

Histone ChIP-seq (by biosample) vagina

Histone ChIP-seq (by biosample) uterus

Histone ChIP-seq (by biosample) upper lobe of left lung

Histone ChIP-seq (by biosample) transverse colon

Histone ChIP-seq (by biosample) tibial nerve

Histone ChIP-seq (by biosample) tibial artery

Histone ChIP-seq (by biosample) thyroid gland

Histone ChIP-seq (by biosample) thoracic aorta

Histone ChIP-seq (by biosample) testis

Histone ChIP-seq (by biosample) T-helper 17 cell

Histone ChIP-seq (by biosample) T-cell

Histone ChIP-seq (by biosample) suprapubic skin

Histone ChIP-seq (by biosample) substantia nigra

Histone ChIP-seq (by biosample) SU-DHL-6

Histone ChIP-seq (by biosample) stomach

Histone ChIP-seq (by biosample) spleen

Histone ChIP-seq (by biosample) skeletal muscle satellite cell

Histone ChIP-seq (by biosample) skeletal muscle myoblast

Histone ChIP-seq (by biosample) skeletal muscle cell

Histone ChIP-seq (by biosample) SK-N-SH

Histone ChIP-seq (by biosample) SK-N-MC

Histone ChIP-seq (by biosample) sigmoid colon

Histone ChIP-seq (by biosample) RWPE2

Histone ChIP-seq (by biosample) RWPE1

Histone ChIP-seq (by biosample) right lobe of liver

Histone ChIP-seq (by biosample) right atrium auricular region

Histone ChIP-seq (by biosample) retinal pigment epithelial cell

Histone ChIP-seq (by biosample) psoas muscle

Histone ChIP-seq (by biosample) prostate gland

Histone ChIP-seq (by biosample) Peyer's patch

Histone ChIP-seq (by biosample) PC-9

Histone ChIP-seq (by biosample) PC-3

Histone ChIP-seq (by biosample) parathyroid adenoma

Histone ChIP-seq (by biosample) pancreas

Histone ChIP-seq (by biosample) Panc1

Histone ChIP-seq (by biosample) ovary

Histone ChIP-seq (by biosample) osteoblast

Histone ChIP-seq (by biosample) OCI-LY7

Histone ChIP-seq (by biosample) OCI-LY3

Histone ChIP-seq (by biosample) OCI-LY1

Histone ChIP-seq (by biosample) NT2/D1

Histone ChIP-seq (by biosample) neutrophil

Histone ChIP-seq (by biosample) NCI-H929

Histone ChIP-seq (by biosample) naive thymus-derived CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) myotube

Histone ChIP-seq (by biosample) muscle layer of colon

Histone ChIP-seq (by biosample) mononuclear cell

Histone ChIP-seq (by biosample) MM.1S

Histone ChIP-seq (by biosample) mesenchymal cell

Histone ChIP-seq (by biosample) MCF-7

Histone ChIP-seq (by biosample) mammary epithelial cell

Histone ChIP-seq (by biosample) lower leg skin

Histone ChIP-seq (by biosample) Loucy

Histone ChIP-seq (by biosample) LNCaP clone FGC

Histone ChIP-seq (by biosample) liver

Histone ChIP-seq (by biosample) KOPT-K1

Histone ChIP-seq (by biosample) KMS-11

Histone ChIP-seq (by biosample) kidney epithelial cell

Histone ChIP-seq (by biosample) keratinocyte

Histone ChIP-seq (by biosample) Karpas-422

Histone ChIP-seq (by biosample) K562

Histone ChIP-seq (by biosample) Jurkat clone E61

Histone ChIP-seq (by biosample) iPS-20b

Histone ChIP-seq (by biosample) iPS-18c

Histone ChIP-seq (by biosample) iPS DF 6.9

Histone ChIP-seq (by biosample) iPS DF 19.11

Histone ChIP-seq (by biosample) HL-60

Histone ChIP-seq (by biosample) HFF-Myc

Histone ChIP-seq (by biosample) HepG2

Histone ChIP-seq (by biosample) HeLa-S3

Histone ChIP-seq (by biosample) heart left ventricle

Histone ChIP-seq (by biosample) HCT116

Histone ChIP-seq (by biosample) GM23338

Histone ChIP-seq (by biosample) GM23248

Histone ChIP-seq (by biosample) GM12878

Histone ChIP-seq (by biosample) GM12865

Histone ChIP-seq (by biosample) GM12864

Histone ChIP-seq (by biosample) GM08714

Histone ChIP-seq (by biosample) GM06990

Histone ChIP-seq (by biosample) gastroesophageal sphincter

Histone ChIP-seq (by biosample) gastrocnemius medialis

Histone ChIP-seq (by biosample) foreskin melanocyte

Histone ChIP-seq (by biosample) foreskin keratinocyte

Histone ChIP-seq (by biosample) foreskin fibroblast

Histone ChIP-seq (by biosample) fibroblast of villous mesenchyme

Histone ChIP-seq (by biosample) fibroblast of the aortic adventitia

Histone ChIP-seq (by biosample) fibroblast of pulmonary artery

Histone ChIP-seq (by biosample) fibroblast of mammary gland

Histone ChIP-seq (by biosample) fibroblast of lung

Histone ChIP-seq (by biosample) fibroblast of dermis

Histone ChIP-seq (by biosample) esophagus squamous epithelium

Histone ChIP-seq (by biosample) esophagus muscularis mucosa

Histone ChIP-seq (by biosample) epithelial cell of proximal tubule

Histone ChIP-seq (by biosample) epithelial cell of prostate

Histone ChIP-seq (by biosample) epithelial cell of esophagus

Histone ChIP-seq (by biosample) endothelial cell of umbilical vein

Histone ChIP-seq (by biosample) embryonic UCSF-4

Histone ChIP-seq (by biosample) embryonic trophoblast cell

Histone ChIP-seq (by biosample) embryonic neural stem progenitor cell

Histone ChIP-seq (by biosample) embryonic neural cell

Histone ChIP-seq (by biosample) embryonic mesodermal cell

Histone ChIP-seq (by biosample) embryonic mesendoderm

Histone ChIP-seq (by biosample) embryonic mesenchymal cell

Histone ChIP-seq (by biosample) embryonic HUES64

Histone ChIP-seq (by biosample) embryonic HUES6

Histone ChIP-seq (by biosample) embryonic HUES48

Histone ChIP-seq (by biosample) embryonic HEK293

Histone ChIP-seq (by biosample) embryonic H7

Histone ChIP-seq (by biosample) embryonic H1

Histone ChIP-seq (by biosample) embryonic ES-I3

Histone ChIP-seq (by biosample) embryonic endodermal cell

Histone ChIP-seq (by biosample) embryonic ectodermal cell

Histone ChIP-seq (by biosample) embryonic cardiovascular progenitor cell

Histone ChIP-seq (by biosample) embryonic cardiac myoblast

Histone ChIP-seq (by biosample) embryonic cardiac muscle cell

Histone ChIP-seq (by biosample) effector memory CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) e5 day smooth muscle cell

Histone ChIP-seq (by biosample) e5 day radial glial cell

Histone ChIP-seq (by biosample) e5 day neuron

Histone ChIP-seq (by biosample) e5 day neuroepithelial stem cell

Histone ChIP-seq (by biosample) e5 day neural stem progenitor cell

Histone ChIP-seq (by biosample) e5 day neural progenitor cell

Histone ChIP-seq (by biosample) e5 day mid-neurogenesis radial glial cells

Histone ChIP-seq (by biosample) e5 day hepatocyte

Histone ChIP-seq (by biosample) e5 day H9

Histone ChIP-seq (by biosample) e17 week brain

Histone ChIP-seq (by biosample) e16 week IMR-90

Histone ChIP-seq (by biosample) e12 week AG04450

Histone ChIP-seq (by biosample) e12 week AG04449

Histone ChIP-seq (by biosample) e110 day thymus

Histone ChIP-seq (by biosample) e110 day muscle of leg

Histone ChIP-seq (by biosample) e108 day large intestine

Histone ChIP-seq (by biosample) DOHH2

Histone ChIP-seq (by biosample) DND-41

Histone ChIP-seq (by biosample) coronary artery

Histone ChIP-seq (by biosample) common myeloid progenitor, CD34-positive

Histone ChIP-seq (by biosample) choroid plexus epithelial cell

Histone ChIP-seq (by biosample) CD8-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) CD8-positive, alpha-beta memory T cell

Histone ChIP-seq (by biosample) CD4-positive, CD25-positive, alpha-beta regulatory T cell

Histone ChIP-seq (by biosample) CD4-positive, alpha-beta T cell

Histone ChIP-seq (by biosample) CD4-positive, alpha-beta memory T cell

Histone ChIP-seq (by biosample) CD14-positive monocyte

Histone ChIP-seq (by biosample) cardiac muscle cell

Histone ChIP-seq (by biosample) cardiac fibroblast

Histone ChIP-seq (by biosample) Caco-2

Histone ChIP-seq (by biosample) C4-2B

Histone ChIP-seq (by biosample) bronchial epithelial cell

Histone ChIP-seq (by biosample) breast epithelium

Histone ChIP-seq (by biosample) brain microvascular endothelial cell

Histone ChIP-seq (by biosample) body of pancreas

Histone ChIP-seq (by biosample) BJ

Histone ChIP-seq (by biosample) bipolar neuron

Histone ChIP-seq (by biosample) BE2C

Histone ChIP-seq (by biosample) B cell

Histone ChIP-seq (by biosample) astrocyte of the spinal cord

Histone ChIP-seq (by biosample) astrocyte of the cerebellum

Histone ChIP-seq (by biosample) astrocyte

Histone ChIP-seq (by biosample) AG10803

Histone ChIP-seq (by biosample) AG09319

Histone ChIP-seq (by biosample) AG09309

Histone ChIP-seq (by biosample) adrenal gland

Histone ChIP-seq (by biosample) adipocyte

Histone ChIP-seq (by biosample) ACC112

Histone ChIP-seq (by biosample) A673

Histone ChIP-seq (by biosample) A549

Histone ChIP-seq (by biosample) 22Rv1

Histone ChIP-seq (by target)

Histone ChIP-seq (by target) H4K91ac

Histone ChIP-seq (by target) H4K8ac

Histone ChIP-seq (by target) H4K5ac

Histone ChIP-seq (by target) H4K20me1

Histone ChIP-seq (by target) H4K12ac

Histone ChIP-seq (by target) H3K9me3

Histone ChIP-seq (by target) H3K9me2

Histone ChIP-seq (by target) H3K9me1

Histone ChIP-seq (by target) H3K9ac

Histone ChIP-seq (by target) H3K79me2

Histone ChIP-seq (by target) H3K79me1

Histone ChIP-seq (by target) H3K56ac

Histone ChIP-seq (by target) H3K4me3

Histone ChIP-seq (by target) H3K4me2

Histone ChIP-seq (by target) H3K4me1

Histone ChIP-seq (by target) H3K4ac

Histone ChIP-seq (by target) H3K36me3

Histone ChIP-seq (by target) H3K27me3

Histone ChIP-seq (by target) H3K27ac

Histone ChIP-seq (by target) H3K23me2

Histone ChIP-seq (by target) H3K23ac

Histone ChIP-seq (by target) H3K18ac

Histone ChIP-seq (by target) H3K14ac

Histone ChIP-seq (by target) H3F3A

Histone ChIP-seq (by target) H2BK5ac

Histone ChIP-seq (by target) H2BK20ac

Histone ChIP-seq (by target) H2BK15ac

Histone ChIP-seq (by target) H2BK12ac

Histone ChIP-seq (by target) H2BK120ac

Histone ChIP-seq (by target) H2AK9ac

Histone ChIP-seq (by target) H2AK5ac

Histone ChIP-seq (by target) H2AFZ

Repli-seq

RRBS

TF ChIP-seq (by biosample)

TF ChIP-seq (by biosample) WI38

TF ChIP-seq (by biosample) WERI-Rb-1

TF ChIP-seq (by biosample) VCaP

TF ChIP-seq (by biosample) vagina

TF ChIP-seq (by biosample) uterus

TF ChIP-seq (by biosample) upper lobe of left lung

TF ChIP-seq (by biosample) transverse colon

TF ChIP-seq (by biosample) tibial nerve

TF ChIP-seq (by biosample) tibial artery

TF ChIP-seq (by biosample) thyroid gland

TF ChIP-seq (by biosample) thoracic aorta

TF ChIP-seq (by biosample) testis

TF ChIP-seq (by biosample) T47D

TF ChIP-seq (by biosample) suprapubic skin

TF ChIP-seq (by biosample) SU-DHL-6

TF ChIP-seq (by biosample) stomach

TF ChIP-seq (by biosample) spleen

TF ChIP-seq (by biosample) SK-N-SH

TF ChIP-seq (by biosample) SK-N-MC

TF ChIP-seq (by biosample) sigmoid colon

TF ChIP-seq (by biosample) SH-SY5Y

TF ChIP-seq (by biosample) RWPE2

TF ChIP-seq (by biosample) RWPE1

TF ChIP-seq (by biosample) right atrium auricular region

TF ChIP-seq (by biosample) retinal pigment epithelial cell

TF ChIP-seq (by biosample) prostate gland

TF ChIP-seq (by biosample) PFSK-1

TF ChIP-seq (by biosample) Peyer's patch

TF ChIP-seq (by biosample) PC-9

TF ChIP-seq (by biosample) PC-3

TF ChIP-seq (by biosample) pancreas

TF ChIP-seq (by biosample) Panc1

TF ChIP-seq (by biosample) osteoblast

TF ChIP-seq (by biosample) OCI-LY7

TF ChIP-seq (by biosample) OCI-LY3

TF ChIP-seq (by biosample) OCI-LY1

TF ChIP-seq (by biosample) NT2/D1

TF ChIP-seq (by biosample) neutrophil

TF ChIP-seq (by biosample) NCI-H929

TF ChIP-seq (by biosample) NB4

TF ChIP-seq (by biosample) myotube

TF ChIP-seq (by biosample) MM.1S

TF ChIP-seq (by biosample) MCF-7

TF ChIP-seq (by biosample) MCF 10A

TF ChIP-seq (by biosample) mammary epithelial cell

TF ChIP-seq (by biosample) lung

TF ChIP-seq (by biosample) LNCaP clone FGC

TF ChIP-seq (by biosample) LNCAP

TF ChIP-seq (by biosample) liver

TF ChIP-seq (by biosample) KMS-11

TF ChIP-seq (by biosample) kidney epithelial cell

TF ChIP-seq (by biosample) keratinocyte

TF ChIP-seq (by biosample) K562

TF ChIP-seq (by biosample) Ishikawa

TF ChIP-seq (by biosample) HL-60

TF ChIP-seq (by biosample) HFF-Myc

TF ChIP-seq (by biosample) HepG2

TF ChIP-seq (by biosample) HeLa-S3

TF ChIP-seq (by biosample) heart left ventricle

TF ChIP-seq (by biosample) HCT116

TF ChIP-seq (by biosample) H54

TF ChIP-seq (by biosample) GM23338

TF ChIP-seq (by biosample) GM20000

TF ChIP-seq (by biosample) GM19193

TF ChIP-seq (by biosample) GM18951

TF ChIP-seq (by biosample) GM13977

TF ChIP-seq (by biosample) GM13976

TF ChIP-seq (by biosample) GM12892

TF ChIP-seq (by biosample) GM12891

TF ChIP-seq (by biosample) GM12878

TF ChIP-seq (by biosample) GM12875

TF ChIP-seq (by biosample) GM12874

TF ChIP-seq (by biosample) GM12873

TF ChIP-seq (by biosample) GM12865

TF ChIP-seq (by biosample) GM12864

TF ChIP-seq (by biosample) GM10266

TF ChIP-seq (by biosample) GM10248

TF ChIP-seq (by biosample) GM08714

TF ChIP-seq (by biosample) GM06990

TF ChIP-seq (by biosample) gastroesophageal sphincter

TF ChIP-seq (by biosample) gastrocnemius medialis

TF ChIP-seq (by biosample) foreskin keratinocyte

TF ChIP-seq (by biosample) foreskin fibroblast

TF ChIP-seq (by biosample) fibroblast of villous mesenchyme

TF ChIP-seq (by biosample) fibroblast of the aortic adventitia

TF ChIP-seq (by biosample) fibroblast of pulmonary artery

TF ChIP-seq (by biosample) fibroblast of mammary gland

TF ChIP-seq (by biosample) fibroblast of lung

TF ChIP-seq (by biosample) fibroblast of dermis

TF ChIP-seq (by biosample) esophagus squamous epithelium

TF ChIP-seq (by biosample) esophagus muscularis mucosa

TF ChIP-seq (by biosample) erythroblast

TF ChIP-seq (by biosample) epithelial cell of proximal tubule

TF ChIP-seq (by biosample) epithelial cell of prostate

TF ChIP-seq (by biosample) epithelial cell of esophagus

TF ChIP-seq (by biosample) endothelial cell of umbilical vein

TF ChIP-seq (by biosample) embryonic neural cell

TF ChIP-seq (by biosample) embryonic HEK293T

TF ChIP-seq (by biosample) embryonic HEK293

TF ChIP-seq (by biosample) embryonic H1

TF ChIP-seq (by biosample) e5 day smooth muscle cell

TF ChIP-seq (by biosample) e5 day neural progenitor cell

TF ChIP-seq (by biosample) e5 day hepatocyte

TF ChIP-seq (by biosample) e16-19 week erythroblast

TF ChIP-seq (by biosample) e16 week IMR-90

TF ChIP-seq (by biosample) e12 week AG04450

TF ChIP-seq (by biosample) e12 week AG04449

TF ChIP-seq (by biosample) DOHH2

TF ChIP-seq (by biosample) D721Med

TF ChIP-seq (by biosample) choroid plexus epithelial cell

TF ChIP-seq (by biosample) CD14-positive monocyte

TF ChIP-seq (by biosample) cardiac muscle cell

TF ChIP-seq (by biosample) Caco-2

TF ChIP-seq (by biosample) C4-2B

TF ChIP-seq (by biosample) bronchial epithelial cell

TF ChIP-seq (by biosample) brain microvascular endothelial cell

TF ChIP-seq (by biosample) body of pancreas

TF ChIP-seq (by biosample) BJ

TF ChIP-seq (by biosample) bipolar neuron

TF ChIP-seq (by biosample) BE2C

TF ChIP-seq (by biosample) B cell

TF ChIP-seq (by biosample) astrocyte of the spinal cord

TF ChIP-seq (by biosample) astrocyte of the cerebellum

TF ChIP-seq (by biosample) astrocyte

TF ChIP-seq (by biosample) AG10803

TF ChIP-seq (by biosample) AG09319

TF ChIP-seq (by biosample) AG09309

TF ChIP-seq (by biosample) adrenal gland

TF ChIP-seq (by biosample) A673

TF ChIP-seq (by biosample) A549

TF ChIP-seq (by biosample) 22Rv1

TF ChIP-seq (by target)

TF ChIP-seq (by target) ZZZ3

TF ChIP-seq (by target) ZXDB

TF ChIP-seq (by target) ZSCAN9

TF ChIP-seq (by target) ZSCAN5C

TF ChIP-seq (by target) ZSCAN5A

TF ChIP-seq (by target) ZSCAN4

TF ChIP-seq (by target) ZSCAN30

TF ChIP-seq (by target) ZSCAN29

TF ChIP-seq (by target) ZSCAN26

TF ChIP-seq (by target) ZSCAN23

TF ChIP-seq (by target) ZSCAN21

TF ChIP-seq (by target) ZSCAN18

TF ChIP-seq (by target) ZSCAN16

TF ChIP-seq (by target) ZNF843

TF ChIP-seq (by target) ZNF837

TF ChIP-seq (by target) ZNF83

TF ChIP-seq (by target) ZNF8

TF ChIP-seq (by target) ZNF792

TF ChIP-seq (by target) ZNF791

TF ChIP-seq (by target) ZNF785

TF ChIP-seq (by target) ZNF781

TF ChIP-seq (by target) ZNF777

TF ChIP-seq (by target) ZNF776

TF ChIP-seq (by target) ZNF770

TF ChIP-seq (by target) ZNF766

TF ChIP-seq (by target) ZNF76

TF ChIP-seq (by target) ZNF747

TF ChIP-seq (by target) ZNF740

TF ChIP-seq (by target) ZNF707

TF ChIP-seq (by target) ZNF704

TF ChIP-seq (by target) ZNF701

TF ChIP-seq (by target) ZNF7

TF ChIP-seq (by target) ZNF697

TF ChIP-seq (by target) ZNF692

TF ChIP-seq (by target) ZNF687

TF ChIP-seq (by target) ZNF680

TF ChIP-seq (by target) ZNF677

TF ChIP-seq (by target) ZNF670

TF ChIP-seq (by target) ZNF664

TF ChIP-seq (by target) ZNF662

TF ChIP-seq (by target) ZNF660

TF ChIP-seq (by target) ZNF658

TF ChIP-seq (by target) ZNF654

TF ChIP-seq (by target) ZNF652

TF ChIP-seq (by target) ZNF645

TF ChIP-seq (by target) ZNF644

TF ChIP-seq (by target) ZNF639

TF ChIP-seq (by target) ZNF629

TF ChIP-seq (by target) ZNF626

TF ChIP-seq (by target) ZNF624

TF ChIP-seq (by target) ZNF623

TF ChIP-seq (by target) ZNF621

TF ChIP-seq (by target) ZNF614

TF ChIP-seq (by target) ZNF610

TF ChIP-seq (by target) ZNF600

TF ChIP-seq (by target) ZNF596

TF ChIP-seq (by target) ZNF592

TF ChIP-seq (by target) ZNF589

TF ChIP-seq (by target) ZNF585B

TF ChIP-seq (by target) ZNF584

TF ChIP-seq (by target) ZNF580

TF ChIP-seq (by target) ZNF577

TF ChIP-seq (by target) ZNF574

TF ChIP-seq (by target) ZNF571

TF ChIP-seq (by target) ZNF561

TF ChIP-seq (by target) ZNF560

TF ChIP-seq (by target) ZNF558

TF ChIP-seq (by target) ZNF555

TF ChIP-seq (by target) ZNF549

TF ChIP-seq (by target) ZNF548

TF ChIP-seq (by target) ZNF547

TF ChIP-seq (by target) ZNF544

TF ChIP-seq (by target) ZNF530

TF ChIP-seq (by target) ZNF529

TF ChIP-seq (by target) ZNF524

TF ChIP-seq (by target) ZNF521

TF ChIP-seq (by target) ZNF518A

TF ChIP-seq (by target) ZNF514

TF ChIP-seq (by target) ZNF513

TF ChIP-seq (by target) ZNF512B

TF ChIP-seq (by target) ZNF512

TF ChIP-seq (by target) ZNF511

TF ChIP-seq (by target) ZNF510

TF ChIP-seq (by target) ZNF507

TF ChIP-seq (by target) ZNF501

TF ChIP-seq (by target) ZNF493

TF ChIP-seq (by target) ZNF491

TF ChIP-seq (by target) ZNF488

TF ChIP-seq (by target) ZNF48

TF ChIP-seq (by target) ZNF473

TF ChIP-seq (by target) ZNF449

TF ChIP-seq (by target) ZNF444

TF ChIP-seq (by target) ZNF433

TF ChIP-seq (by target) ZNF426

TF ChIP-seq (by target) ZNF423

TF ChIP-seq (by target) ZNF416

TF ChIP-seq (by target) ZNF407

TF ChIP-seq (by target) ZNF404

TF ChIP-seq (by target) ZNF398

TF ChIP-seq (by target) ZNF395

TF ChIP-seq (by target) ZNF394

TF ChIP-seq (by target) ZNF391

TF ChIP-seq (by target) ZNF384

TF ChIP-seq (by target) ZNF37A

TF ChIP-seq (by target) ZNF362

TF ChIP-seq (by target) ZNF354C

TF ChIP-seq (by target) ZNF354B

TF ChIP-seq (by target) ZNF350

TF ChIP-seq (by target) ZNF341

TF ChIP-seq (by target) ZNF34

TF ChIP-seq (by target) ZNF331

TF ChIP-seq (by target) ZNF324

TF ChIP-seq (by target) ZNF318

TF ChIP-seq (by target) ZNF316

TF ChIP-seq (by target) ZNF311

TF ChIP-seq (by target) ZNF302

TF ChIP-seq (by target) ZNF300

TF ChIP-seq (by target) ZNF3

TF ChIP-seq (by target) ZNF292

TF ChIP-seq (by target) ZNF282

TF ChIP-seq (by target) ZNF280D

TF ChIP-seq (by target) ZNF280C

TF ChIP-seq (by target) ZNF280A

TF ChIP-seq (by target) ZNF274

TF ChIP-seq (by target) ZNF266

TF ChIP-seq (by target) ZNF263

TF ChIP-seq (by target) ZNF26

TF ChIP-seq (by target) ZNF248

TF ChIP-seq (by target) ZNF24

TF ChIP-seq (by target) ZNF239

TF ChIP-seq (by target) ZNF23

TF ChIP-seq (by target) ZNF223

TF ChIP-seq (by target) ZNF221

TF ChIP-seq (by target) ZNF217

TF ChIP-seq (by target) ZNF214

TF ChIP-seq (by target) ZNF213

TF ChIP-seq (by target) ZNF211

TF ChIP-seq (by target) ZNF205

TF ChIP-seq (by target) ZNF202

TF ChIP-seq (by target) ZNF2

TF ChIP-seq (by target) ZNF197

TF ChIP-seq (by target) ZNF195

TF ChIP-seq (by target) ZNF19

TF ChIP-seq (by target) ZNF189

TF ChIP-seq (by target) ZNF184

TF ChIP-seq (by target) ZNF18

TF ChIP-seq (by target) ZNF175

TF ChIP-seq (by target) ZNF174

TF ChIP-seq (by target) ZNF169

TF ChIP-seq (by target) ZNF16

TF ChIP-seq (by target) ZNF157

TF ChIP-seq (by target) ZNF155

TF ChIP-seq (by target) ZNF148

TF ChIP-seq (by target) ZNF146

TF ChIP-seq (by target) ZNF143

TF ChIP-seq (by target) ZNF140

TF ChIP-seq (by target) ZNF138

TF ChIP-seq (by target) ZNF133

TF ChIP-seq (by target) ZNF132

TF ChIP-seq (by target) ZNF121

TF ChIP-seq (by target) ZNF114

TF ChIP-seq (by target) ZNF112

TF ChIP-seq (by target) ZNF101

TF ChIP-seq (by target) ZNF10

TF ChIP-seq (by target) ZMYM3

TF ChIP-seq (by target) ZMIZ1

TF ChIP-seq (by target) ZKSCAN8

TF ChIP-seq (by target) ZKSCAN1

TF ChIP-seq (by target) ZIK1

TF ChIP-seq (by target) ZIC2

TF ChIP-seq (by target) ZGPAT

TF ChIP-seq (by target) ZFP91

TF ChIP-seq (by target) ZFP69B

TF ChIP-seq (by target) ZFP64

TF ChIP-seq (by target) ZFP41

TF ChIP-seq (by target) ZFP37

TF ChIP-seq (by target) ZFP3

TF ChIP-seq (by target) ZFHX2

TF ChIP-seq (by target) ZEB2

TF ChIP-seq (by target) ZEB1

TF ChIP-seq (by target) ZC3H8

TF ChIP-seq (by target) ZBTB8A

TF ChIP-seq (by target) ZBTB7B

TF ChIP-seq (by target) ZBTB6

TF ChIP-seq (by target) ZBTB5

TF ChIP-seq (by target) ZBTB49

TF ChIP-seq (by target) ZBTB48

TF ChIP-seq (by target) ZBTB44

TF ChIP-seq (by target) ZBTB40

TF ChIP-seq (by target) ZBTB33

TF ChIP-seq (by target) ZBTB26

TF ChIP-seq (by target) ZBTB25

TF ChIP-seq (by target) ZBTB21

TF ChIP-seq (by target) ZBTB20

TF ChIP-seq (by target) ZBTB2

TF ChIP-seq (by target) ZBTB17

TF ChIP-seq (by target) ZBTB12

TF ChIP-seq (by target) ZBTB11

TF ChIP-seq (by target) ZBTB10

TF ChIP-seq (by target) ZBED1

TF ChIP-seq (by target) YY2

TF ChIP-seq (by target) YY1

TF ChIP-seq (by target) YBX1

TF ChIP-seq (by target) XRCC5

TF ChIP-seq (by target) WT1

TF ChIP-seq (by target) VEZF1

TF ChIP-seq (by target) USF2

TF ChIP-seq (by target) USF1

TF ChIP-seq (by target) UBTF

TF ChIP-seq (by target) TSHZ1

TF ChIP-seq (by target) TSC22D4

TF ChIP-seq (by target) TRIM28

TF ChIP-seq (by target) TRIM25

TF ChIP-seq (by target) TRIM24

TF ChIP-seq (by target) TRIM22

TF ChIP-seq (by target) THRB

TF ChIP-seq (by target) THRA

TF ChIP-seq (by target) THAP11

TF ChIP-seq (by target) THAP1

TF ChIP-seq (by target) TGIF2

TF ChIP-seq (by target) TFE3

TF ChIP-seq (by target) TFDP1

TF ChIP-seq (by target) TFAP4

TF ChIP-seq (by target) TEAD4

TF ChIP-seq (by target) TEAD3

TF ChIP-seq (by target) TEAD1

TF ChIP-seq (by target) TCF7L2

TF ChIP-seq (by target) TCF7

TF ChIP-seq (by target) TCF12

TF ChIP-seq (by target) TBX3

TF ChIP-seq (by target) TBX21

TF ChIP-seq (by target) TBP

TF ChIP-seq (by target) STAT5A

TF ChIP-seq (by target) STAT3

TF ChIP-seq (by target) STAT2

TF ChIP-seq (by target) STAT1

TF ChIP-seq (by target) SRF

TF ChIP-seq (by target) SREBF2

TF ChIP-seq (by target) SREBF1

TF ChIP-seq (by target) SP7

TF ChIP-seq (by target) SP5

TF ChIP-seq (by target) SP3

TF ChIP-seq (by target) SP2

TF ChIP-seq (by target) SP1

TF ChIP-seq (by target) SOX6

TF ChIP-seq (by target) SOX5

TF ChIP-seq (by target) SOX13

TF ChIP-seq (by target) SMAD5

TF ChIP-seq (by target) SMAD4

TF ChIP-seq (by target) SMAD2

TF ChIP-seq (by target) SMAD1

TF ChIP-seq (by target) SKIL

TF ChIP-seq (by target) SIX5

TF ChIP-seq (by target) SIX4

TF ChIP-seq (by target) SFPQ

TF ChIP-seq (by target) SCRT2

TF ChIP-seq (by target) SCRT1

TF ChIP-seq (by target) SALL2

TF ChIP-seq (by target) SALL1

TF ChIP-seq (by target) RXRB

TF ChIP-seq (by target) RXRA

TF ChIP-seq (by target) RUNX3

TF ChIP-seq (by target) RUNX1

TF ChIP-seq (by target) RNF2

TF ChIP-seq (by target) RLF

TF ChIP-seq (by target) RFX5

TF ChIP-seq (by target) RFX3

TF ChIP-seq (by target) RFX1

TF ChIP-seq (by target) REST

TF ChIP-seq (by target) RELA

TF ChIP-seq (by target) RCOR2

TF ChIP-seq (by target) RBPJ

TF ChIP-seq (by target) RBAK

TF ChIP-seq (by target) PTTG1

TF ChIP-seq (by target) PRDM6

TF ChIP-seq (by target) PRDM4

TF ChIP-seq (by target) PRDM2

TF ChIP-seq (by target) PRDM10

TF ChIP-seq (by target) PRDM1

TF ChIP-seq (by target) PPARG

TF ChIP-seq (by target) POU5F1

TF ChIP-seq (by target) POU2F2

TF ChIP-seq (by target) PKNOX1

TF ChIP-seq (by target) PHB2

TF ChIP-seq (by target) PBX3

TF ChIP-seq (by target) PBX2

TF ChIP-seq (by target) PAX8

TF ChIP-seq (by target) PAX5

TF ChIP-seq (by target) PATZ1

TF ChIP-seq (by target) OVOL3

TF ChIP-seq (by target) OSR2

TF ChIP-seq (by target) NRF1

TF ChIP-seq (by target) NR4A1

TF ChIP-seq (by target) NR3C1

TF ChIP-seq (by target) NR2F6

TF ChIP-seq (by target) NR2F2

TF ChIP-seq (by target) NR2F1

TF ChIP-seq (by target) NR2C2

TF ChIP-seq (by target) NR2C1

TF ChIP-seq (by target) NR0B1

TF ChIP-seq (by target) NKRF

TF ChIP-seq (by target) NFYC

TF ChIP-seq (by target) NFYB

TF ChIP-seq (by target) NFYA

TF ChIP-seq (by target) NFXL1

TF ChIP-seq (by target) NFIL3

TF ChIP-seq (by target) NFIC

TF ChIP-seq (by target) NFIB

TF ChIP-seq (by target) NFIA

TF ChIP-seq (by target) NFE2L2

TF ChIP-seq (by target) NFE2

TF ChIP-seq (by target) NFATC3

TF ChIP-seq (by target) NFATC1

TF ChIP-seq (by target) NEUROD1

TF ChIP-seq (by target) NANOG

TF ChIP-seq (by target) MZF1

TF ChIP-seq (by target) MYRF

TF ChIP-seq (by target) MYNN

TF ChIP-seq (by target) MYC

TF ChIP-seq (by target) MYBL2

TF ChIP-seq (by target) MXI1

TF ChIP-seq (by target) MXD3

TF ChIP-seq (by target) MNT

TF ChIP-seq (by target) MLX

TF ChIP-seq (by target) MLLT1

TF ChIP-seq (by target) MIXL1

TF ChIP-seq (by target) MITF

TF ChIP-seq (by target) MGA

TF ChIP-seq (by target) MEIS2

TF ChIP-seq (by target) MEF2D

TF ChIP-seq (by target) MEF2C

TF ChIP-seq (by target) MEF2B

TF ChIP-seq (by target) MEF2A

TF ChIP-seq (by target) MBD1

TF ChIP-seq (by target) MAZ

TF ChIP-seq (by target) MAX

TF ChIP-seq (by target) MAFK

TF ChIP-seq (by target) MAFG

TF ChIP-seq (by target) MAFF

TF ChIP-seq (by target) LEF1

TF ChIP-seq (by target) LCORL

TF ChIP-seq (by target) KLF9

TF ChIP-seq (by target) KLF8

TF ChIP-seq (by target) KLF7

TF ChIP-seq (by target) KLF6

TF ChIP-seq (by target) KLF5

TF ChIP-seq (by target) KLF4

TF ChIP-seq (by target) KLF17

TF ChIP-seq (by target) KLF16

TF ChIP-seq (by target) KLF14

TF ChIP-seq (by target) KLF13

TF ChIP-seq (by target) KLF11

TF ChIP-seq (by target) KLF10

TF ChIP-seq (by target) KLF1

TF ChIP-seq (by target) KDM6A

TF ChIP-seq (by target) JUND

TF ChIP-seq (by target) JUN

TF ChIP-seq (by target) IRF9

TF ChIP-seq (by target) IRF5

TF ChIP-seq (by target) IRF4

TF ChIP-seq (by target) IRF3

TF ChIP-seq (by target) IRF2

TF ChIP-seq (by target) IRF1

TF ChIP-seq (by target) INSM2

TF ChIP-seq (by target) ILK

TF ChIP-seq (by target) IKZF5

TF ChIP-seq (by target) IKZF3

TF ChIP-seq (by target) IKZF2

TF ChIP-seq (by target) IKZF1

TF ChIP-seq (by target) ID3

TF ChIP-seq (by target) HSF1

TF ChIP-seq (by target) HOMEZ

TF ChIP-seq (by target) HNRNPK

TF ChIP-seq (by target) HNF4G

TF ChIP-seq (by target) HNF4A

TF ChIP-seq (by target) HNF1A

TF ChIP-seq (by target) HMG20B

TF ChIP-seq (by target) HMG20A

TF ChIP-seq (by target) HMBOX1

TF ChIP-seq (by target) HLF

TF ChIP-seq (by target) HINFP

TF ChIP-seq (by target) HIC1

TF ChIP-seq (by target) HHEX

TF ChIP-seq (by target) HES1

TF ChIP-seq (by target) HBP1

TF ChIP-seq (by target) GTF3C2

TF ChIP-seq (by target) GTF2B

TF ChIP-seq (by target) GMEB2

TF ChIP-seq (by target) GMEB1

TF ChIP-seq (by target) GLIS2

TF ChIP-seq (by target) GLIS1

TF ChIP-seq (by target) GLI4

TF ChIP-seq (by target) GLI2

TF ChIP-seq (by target) GFI1B

TF ChIP-seq (by target) GATAD2B

TF ChIP-seq (by target) GATA4

TF ChIP-seq (by target) GATA3

TF ChIP-seq (by target) GATA2

TF ChIP-seq (by target) GATA1

TF ChIP-seq (by target) GABPB1

TF ChIP-seq (by target) GABPA

TF ChIP-seq (by target) FOXP2

TF ChIP-seq (by target) FOXK2

TF ChIP-seq (by target) FOXJ2

TF ChIP-seq (by target) FOXA3

TF ChIP-seq (by target) FOXA2

TF ChIP-seq (by target) FOXA1

TF ChIP-seq (by target) FOSL2

TF ChIP-seq (by target) FOSL1

TF ChIP-seq (by target) FOS

TF ChIP-seq (by target) FEZF1

TF ChIP-seq (by target) ETV6

TF ChIP-seq (by target) ETV5

TF ChIP-seq (by target) ETV4

TF ChIP-seq (by target) ETV1

TF ChIP-seq (by target) ETS2

TF ChIP-seq (by target) ETS1

TF ChIP-seq (by target) ESRRA

TF ChIP-seq (by target) ESR1

TF ChIP-seq (by target) EP300

TF ChIP-seq (by target) ELK4

TF ChIP-seq (by target) ELK1

TF ChIP-seq (by target) ELF4

TF ChIP-seq (by target) ELF1

TF ChIP-seq (by target) EGR2

TF ChIP-seq (by target) EGR1

TF ChIP-seq (by target) EBF1

TF ChIP-seq (by target) E4F1

TF ChIP-seq (by target) E2F8

TF ChIP-seq (by target) E2F7

TF ChIP-seq (by target) E2F6

TF ChIP-seq (by target) E2F5

TF ChIP-seq (by target) E2F4

TF ChIP-seq (by target) E2F1

TF ChIP-seq (by target) DEAF1

TF ChIP-seq (by target) DACH1

TF ChIP-seq (by target) CUX1

TF ChIP-seq (by target) CTCFL

TF ChIP-seq (by target) CTCF

TF ChIP-seq (by target) CREM

TF ChIP-seq (by target) CREB3L1

TF ChIP-seq (by target) CREB3

TF ChIP-seq (by target) CREB1

TF ChIP-seq (by target) CLOCK

TF ChIP-seq (by target) CHD7

TF ChIP-seq (by target) CHAMP1

TF ChIP-seq (by target) CEBPZ

TF ChIP-seq (by target) CEBPG

TF ChIP-seq (by target) CEBPB

TF ChIP-seq (by target) CEBPA

TF ChIP-seq (by target) CDC5L

TF ChIP-seq (by target) CC2D1A

TF ChIP-seq (by target) CBX2

TF ChIP-seq (by target) CBX1

TF ChIP-seq (by target) CBFB

TF ChIP-seq (by target) BRF2

TF ChIP-seq (by target) BHLHE40

TF ChIP-seq (by target) BCLAF1

TF ChIP-seq (by target) BCL6B

TF ChIP-seq (by target) BCL6

TF ChIP-seq (by target) BCL3

TF ChIP-seq (by target) BCL11B

TF ChIP-seq (by target) BCL11A

TF ChIP-seq (by target) BATF

TF ChIP-seq (by target) BACH1

TF ChIP-seq (by target) ATF4

TF ChIP-seq (by target) ATF3

TF ChIP-seq (by target) ATF2

TF ChIP-seq (by target) ATF1

TF ChIP-seq (by target) ARNT

TF ChIP-seq (by target) ARID4B

TF ChIP-seq (by target) ARID3A

TF ChIP-seq (by target) ARHGAP35

TF ChIP-seq (by target) AHR

TF ChIP-seq (by target) AFF1

TF ChIP-seq (by target) AEBP2

TF ChIP-seq (by target) ADNP

Mapping and Sequencing

Genes and Gene Predictions

NCBI RefSeq

RefSeq genes from NCBI

Genes Archive

Previous versions of GENCODE/UCSC Genes (knownGene)

UCSC Genes 2013

Legacy UCSC Genes track (knownGene) from 2013

GENCODE V47lift37

GENCODE V45lift37

GENCODE V48lift37

GENCODE V49lift37

CCDS

Consensus CDS

CRISPR Targets

CRISPR/Cas9 -NGG Targets, whole genome

Ensembl Genes

EvoFold

EvoFold Predictions of RNA Secondary Structure

Exoniphy

Exoniphy Human/Mouse/Rat/Dog

GENCODE Versions

Container of all new and previous GENCODE releases

GENCODE Genes V7

Gene Annotations from ENCODE/GENCODE Version 7

GENCODE Genes V14

Gene Annotations from ENCODE/GENCODE Version 14

GENCODE Genes V17

Gene Annotations from ENCODE/GENCODE Version 17

GENCODE Genes V19

Gene Annotations from GENCODE Version 19

GENCODE Gene V24lift37

Gene Annotations from GENCODE Version 24lift37

GENCODE Gene V27lift37

Gene Annotations from GENCODE Version 27lift37

GENCODE V28lift37

GENCODE lifted annotations from V28lift37 (Ensembl 92)

GENCODE V31lift37

GENCODE lifted annotations from V31lift37 (Ensembl 97)

GENCODE V33lift37

GENCODE lifted annotations from V33lift37 (Ensembl 99)

GENCODE V34lift37

GENCODE lifted annotations from V34lift37 (Ensembl 100)

GENCODE V35lift37

GENCODE lifted annotations from V35lift37 (Ensembl 101)

GENCODE V36lift37

GENCODE lifted annotations from V36lift37 (Ensembl 102)

GENCODE V37lift37

GENCODE lifted annotations from V37lift37 (Ensembl 103)

GENCODE V38lift37

GENCODE lifted annotations from V38lift37 (Ensembl 104)

GENCODE V39lift37

GENCODE lifted annotations from V39lift37 (Ensembl 105)

GENCODE V40lift37

GENCODE lifted annotations from V40lift37 (Ensembl 106)

GENCODE V41lift37

GENCODE lifted annotations from V41lift37 (Ensembl 107)

GENCODE V42lift37

GENCODE lifted annotations from V42lift37 (Ensembl 108)

GENCODE V43lift37

GENCODE lifted annotations from V43lift37 (Ensembl 109)

GENCODE V44lift37

GENCODE lifted annotations from V44lift37 (Ensembl 110)

GENCODE V45lift37

GENCODE lifted annotations from V45lift37 (Ensembl 111)

GENCODE V46lift37

GENCODE lifted annotations from V46lift37 (Ensembl 112)

GENCODE V47lift37

GENCODE lifted annotations from V47lift37 (Ensembl 113)

GENCODE V48lift37

GENCODE lifted annotations from V48lift37 (Ensembl 114)

GENCODE V49lift37

GENCODE lifted annotations from V49lift37 (Ensembl 115)

GENCODE V50lift37

GENCODE lifted annotations from V50lift37 (Ensembl 116)

H-Inv 7.0

H-Inv 7.0 Gene Predictions

HGNC

HUGO Gene Nomenclature

IKMC Genes Mapped

International Knockout Mouse Consortium Genes Mapped to Human Genome

lincRNAs

Human Body Map lincRNAs and TUCP Transcripts

lincRNA Transcripts

lincRNA and TUCP transcripts

lincRNA RNA-Seq Reads

lincRNA RNA-Seq reads expression abundances

LRG Transcripts

Locus Reference Genomic (LRG) / RefSeqGene Fixed Transcript Annotations

MGC/ORFeome Genes

MGC/ORFeome Full ORF mRNA Clones

ORFeome Clones

ORFeome Collaboration Gene Clones

MGC Genes

Mammalian Gene Collection Full ORF mRNAs

Other RefSeq

Non-Human RefSeq Genes

Pfam in GENCODE

Pfam Domains in GENCODE Genes

Prediction Archive

Gene Prediction Archive

SIB Genes

Swiss Institute of Bioinformatics Gene Predictions from mRNA and ESTs

SGP Genes

SGP Gene Predictions Using Mouse/Human Homology

N-SCAN

N-SCAN Gene Predictions

Genscan Genes

Genscan Gene Predictions

Geneid Genes

Geneid Gene Predictions

AUGUSTUS

AUGUSTUS ab initio gene predictions v3.1

AceView Genes

AceView Gene Models With Alt-Splicing

Retroposed Genes

Retroposed Genes V5, Including Pseudogenes

sno/miRNA

C/D and H/ACA Box snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase

TransMap V5

TransMap Alignments Version 5

TransMap ESTs

TransMap EST Mappings Version 5

TransMap RNA

TransMap GenBank RNA Mappings Version 5

TransMap RefGene

TransMap RefSeq Gene Mappings Version 5

TransMap Ensembl

TransMap Ensembl and GENCODE Mappings Version 5

tRNA Genes

Transfer RNA Genes Identified with tRNAscan-SE

UCSC Alt Events

Alternative Splicing, Alternative Promoter and Similar Events in UCSC Genes

UniProt

UniProt SwissProt/TrEMBL Protein Annotations

Vega Genes

Vega Annotations

Yale Pseudo60

Yale Pseudogenes based on Ensembl Release 60

Phenotypes, Variants, and Literature

Publications

Publications: Sequences in Scientific Articles

AlphaMissense

AlphaMissense Score for all possible single-basepair mutations (zoom in for scores)

CADD 1.6

CADD 1.6 Score for all single-basepair mutations and selected insertions/deletions

CADD 1.6 Ins

CADD 1.6 Score: Insertions - label is length of insertion

CADD 1.6 Del

CADD 1.6 Score: Deletions - label is length of deletion

CADD 1.6

CADD 1.6 Score for all possible single-basepair mutations (zoom in for scores)

CADD 1.7

CADD 1.7 Score for all single-basepair mutations and selected insertions/deletions

CADD 1.7 Ins

CADD 1.7 Score: Insertions - label is length of insertion

CADD 1.7 Del

CADD 1.7 Score: Deletions - label is length of deletion

CADD 1.7

CADD 1.7 Score for all possible single-basepair mutations (zoom in for scores)

CIViC

CIViC - Expert & crowd-sourced cancer variant interpretation

ClinGen

ClinGen curation activities (Dosage Sensitivity and Gene-Disease Validity)

ClinGen CNVs

Clinical Genome Resource (ClinGen) CNVs

ClinVar Variants

Constraint scores

Human constraint scores

LINSIGHT

LINSIGHT - Probability of deleterious fitness and negative selection on noncoding sites

MTR All Data

MTR - Missense Tolerance Ratio Scores all annotations

MTR Scores

MTR - Missense Tolerance Ratio Scores by base

MetaDome All Data

MetaDome - Tolerance Landscape score all annotations

MetaDome

MetaDome - Tolerance Landscape score

HMC

HMC - Homologous Missense Constraint Score on PFAM domains

JARVIS

JARVIS: score to prioritize non-coding regions for disease relevance

Coriell CNVs

Coriell Cell Line Copy Number Variants

COVID Data

Container of SARS-CoV-2 data

COVID Rare Harmful Var

Rare variants underlying COVID-19 severity and susceptibility from the COVID Human Genetics Effort

COVID GWAS v3

GWAS meta-analyses from the COVID-19 Host Genetics Initiative

COVID GWAS v4

COVID risk variants from GWAS meta-analyses by the COVID-19 Host Genetics Initiative (Rel 4, Oct 2020)

updated Deleteriousness Predictions

Variant Deleteriousness / Variant Impact Prediction Scores

MutScore

MutScore: Variant clustering in 3D protein structures

M-CAP

M-CAP: High sensitivity pathogenicity classifier

BayesDel

BayesDel: Deleteriousness meta-score

Development Delay

Copy Number Variation Morbidity Map of Developmental Delay

Dosage Sensitivity

pHaplo and pTriplo dosage sensitivity map from Collins et al 2022

G2P Project

Gene2Phenotype Project

GAD View

Genetic Association Studies of Complex Diseases and Disorders

GenCC

GenCC: The Gene Curation Coalition Annotations

Gene Interactions

Protein Interactions from Curated Databases and Text-Mining

GeneReviews

GWAS Catalog

NHGRI-EBI Catalog of Published Genome-Wide Association Studies

Haploinsufficiency

Haploinsufficiency predictions for genes from DECIPHER

HGMD Public 2025

Human Gene Mutation Database - Public Version 2025

Lens Patents

Lens PatSeq Patent Document Sequences

MGI Mouse QTL

MGI Mouse Quantitative Trait Loci Coarsely Mapped to Human

MITOMAP

MITOMAP: A human mitochondrial genome database

Orphanet

Orphadata: Aggregated Data From Orphanet

PanelApp

Genomics England and Australia PanelApp Diagnostics

Polygenic Risk Scores

PRS eMERGE

Polygenic Risk Scores from NHGRI Electronic Medical Records and Genomics (eMERGE) project

REVEL Scores

REVEL Pathogenicity Score for single-base coding mutations (zoom for exact score)

RGD Human QTL

Human Quantitative Trait Locus from RGD

RGD Rat QTL

Rat Quantitative Trait Locus from RGD Coarsely Mapped to Human

SNPedia

Splicing Impact

Splicing Impact Prediction Scores and Databases

AbSplice Scores

Aberrant Splicing Prediction Scores

UniProt Variants

UniProt/SwissProt Amino Acid Substitutions

updated Variants in Papers

Genetic Variants mentioned in scientific publications

updated Varaico Variants (suppl)

Varaico Variants extracted from Supplementary Data

updated Varaico Variants

Varaico Variants extracted from full text publications, titles, and abstracts

PubTator Variants

dbSNP variants and other genetic variants grounded to dbSNP by tmVar; collected by PubTator3

enGenome VarChat

enGenome VarChat: Literature match and variant's summary

Avada Variants

Avada Variants extracted from full text publications

Web Sequences

DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research

Variation

dbSNP 155

Short Genetic Variants from dbSNP release 155

1000G Archive

1000 Genomes Archive

1000G Ph3 Vars

1000 Genomes Phase 3 Integrated Variant Calls: SNVs, Indels, SVs

1000G Ph3 Accsbl

1000 Genomes Project Phase 3 Paired-end Accessible Regions

1000G Ph1 Vars

1000 Genomes Phase 1 Integrated Variant Calls: SNVs, Indels, SVs

1000G Ph1 Accsbl

1000 Genomes Project Phase 1 Paired-end Accessible Regions

Array Probesets

Microarray Probesets and OGM sites

dbSNP Archive

dbSNP Track Archive

Mult. SNPs(138)

Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci

Flagged SNPs(138)

Simple Nucleotide Polymorphisms (dbSNP 138) Flagged as Clinically Assoc

Common SNPs(138)

Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples

All SNPs(138)

Simple Nucleotide Polymorphisms (dbSNP 138)

Flagged SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141) Flagged by dbSNP as Clinically Assoc

Common SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141) Found in >= 1% of Samples

All SNPs(141)

Simple Nucleotide Polymorphisms (dbSNP 141)

Mult. SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) That Map to Multiple Genomic Loci

Flagged SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) Flagged by dbSNP as Clinically Assoc

Common SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142) Found in >= 1% of Samples

All SNPs(142)

Simple Nucleotide Polymorphisms (dbSNP 142)

Mult. SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) That Map to Multiple Genomic Loci

Flagged SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) Flagged by dbSNP as Clinically Assoc

Common SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144) Found in >= 1% of Samples

All SNPs(144)

Simple Nucleotide Polymorphisms (dbSNP 144)

Mult. SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) That Map to Multiple Genomic Loci

Flagged SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) Flagged by dbSNP as Clinically Assoc

Common SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146) Found in >= 1% of Samples

All SNPs(146)

Simple Nucleotide Polymorphisms (dbSNP 146)

Mult. SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci

Flagged SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) Flagged by dbSNP as Clinically Assoc

Common SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147) Found in >= 1% of Samples

All SNPs(147)

Simple Nucleotide Polymorphisms (dbSNP 147)

Mult. SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) That Map to Multiple Genomic Loci

Flagged SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) Flagged by dbSNP as Clinically Assoc

Common SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150) Found in >= 1% of Samples

All SNPs(150)

Simple Nucleotide Polymorphisms (dbSNP 150)

Mult. SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) That Map to Multiple Genomic Loci

Flagged SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) Flagged by dbSNP as Clinically Assoc

All SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151)

Common SNPs(151)

Simple Nucleotide Polymorphisms (dbSNP 151) Found in >= 1% of Samples

dbSNP 153

Short Genetic Variants from dbSNP release 153

dbVar Struct Var

NCBI dbVar Structural Variants

dbVar Somatic SV

NCBI dbVar Somatic Structural Variants

dbVar Other SV

NCBI dbVar Other Structural Variants

dbVar Conflict SV

NCBI dbVar Curated Conflict Variants

dbVar Common SV

NCBI dbVar Curated Common Structural Variants

denovo-db

denovo-db v.1.6.1

DGV Struct Var

Database of Genomic Variants: Structural Variation (CNV, Inversion, In/del)

EVS Variants

NHLBI GO Exome Sequencing Project (ESP) - Variants from 6,503 Exomes

ExAC

Exome Aggregation Consortium (ExAC) Variants and Calling Regions

Genome In a Bottle

Genome In a Bottle Structural Variants and Trios

Genome Variants

Personal Genome Variants

GIS DNA PET

ENCODE Genome Institute of Singapore DNA Paired-End Ditags

gnomAD

Genome Aggregation Database (gnomAD) - Variants, Coverage, and Constraint

gnomAD Structural Variants

Genome Aggregation Database (gnomAD) - Structural Variants

gnomAD pext

gnomAD Proportion Expression Across Transcript Scores (pext)

gnomAD MPC

gnomAD Missense Deleteriousness Prediction by Constraint (MPC)

gnomAD Genomes Variants

Genome Aggregation Database (gnomAD) Genome Variants v2.1.1

gnomAD Exomes Variants

Genome Aggregation Database (gnomAD) Exome Variants v2.1.1

gnomAD Coverage

Genome Aggregation Database (gnomAD) - Genome and Exome Sample Coverage

gnomAD Constraint Metrics

Genome Aggregation Database (gnomAD) - Predicted Constraint Metrics (pLI and Z-scores)

HAIB Genotype

Genotype (CNV and SNP) by Illumina 1MDuo and CBS from ENCODE/HudsonAlpha

HapMap SNPs

HapMap SNPs (rel27, merged Phase II + Phase III genotypes)

HGDP Allele Freq

Human Genome Diversity Project SNP Population Allele Frequencies

Phased Variants

Phased Variants from various sequencing projects

Simons Genome Diversity Project 0.3k WGS

Phased Variants: Simons Genome Diversity Project - 279 samples, unmixed populations

Mexico Biobank, 6k Array

Phased Variants: Mexico Biobank 6k Array

Platinum Genomes

Platinum genome variants

RNA and Transcriptome

CGAP SAGE

CGAP Long SAGE

Gene Bounds

Gene Boundaries as Defined by RNA and Spliced EST Clusters

H-Inv

H-Invitational Genes mRNA Alignments

Human ESTs

Human ESTs Including Unspliced

Human mRNAs

Human mRNAs from GenBank

Human RNA Editing

Human RNA Editing from the DAtabase of RNa EDiting

Other ESTs

Non-Human ESTs from GenBank

Other mRNAs

Non-Human mRNAs from GenBank

Poly(A)

Poly(A) Sites, Both Reported and Predicted

PolyA-Seq

Poly(A)-sequencing from Merck Research Laboratories

SIB Alt-Splicing

Alternative Splicing Graph from Swiss Institute of Bioinformatics

Spliced ESTs

Human ESTs That Have Been Spliced

UniGene

UniGene Alignments

Expression

GTEx Gene V8

Gene Expression in 54 tissues from GTEx RNA-seq of 17382 samples, 948 donors (V8, Aug 2019)

Allen Brain

Allen Brain Atlas Probes

Burge RNA-seq

Burge Lab RNA-seq Aligned by GEM Mapper

CSHL Small RNA-seq

Small RNA-seq from ENCODE/Cold Spring Harbor Lab

ENC Exon Array

ENCODE Exon Array

UW Affy Exon

Affymetrix Exon Array from ENCODE/University of Washington

Duke Affy Exon

Affymetrix Exon Array from ENCODE/Duke

ENC ProtGeno

ENCODE Proteogenomics

UNC/BSU ProtGeno

Proteogenomics Hg19 Mapping from ENCODE/Univ. North Carolina/Boise State Univ.

UNC/BSU ProtGenc

Proteogenomics Hg19 and GENCODE Mapping from ENCODE/Univ. North Carolina/Boise State Univ.

ENC RNA-seq

ENCODE RNA-seq

SYDH RNA-seq

RNA-seq from ENCODE/Stanford/Yale/USC/Harvard

HAIB RNA-seq

RNA-seq from ENCODE/HAIB

GIS RNA-seq

RNA-seq from ENCODE/Genome Institute of Singapore

CSHL Long RNA-seq

Long RNA-seq from ENCODE/Cold Spring Harbor Lab

Caltech RNA-seq

RNA-seq from ENCODE/Caltech

EPDnew Promoters

Promoters from EPDnew human version 006

Affy Archive

Affymetrix Archive

Affy U133Plus2

Alignments of Affymetrix Consensus/Exemplars from HG-U133 Plus 2.0

Affy U133

Alignments of Affymetrix Consensus/Exemplars from HG-U133

Affy U95

Alignments of Affymetrix Consensus/Exemplars from HG-U95

Affy RNA Loc

RNA Subcellular Localization by Tiling Microarray from ENCODE Affymetrix/CSHL

Affy GNF1H

Alignments of Affymetrix Consensus/Exemplars from GNF1H

Affy Exon Array

Affymetrix Human Exon Array Probes and Probesets

GIS RNA PET

RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS

GNF Atlas 2

GNF Expression Atlas 2

GTEx Gene

Gene Expression in 53 tissues from GTEx RNA-seq of 8555 samples (570 donors)

GTEx Transcript

Transcript Expression in 53 tissues from GTEx RNA-seq of 8555 samples/570 donors

GWIPS-viz Riboseq

Ribosome Profiling from GWIPS-viz

Illumina WG-6

Alignments of Illumina WG-6 3.0 Probe Set

PeptideAtlas

Peptide sequences identified from MS spectra of 971 samples by PeptideAtlas

qPCR Primers

Human (hg19) Whole Transcriptome qPCR Primers

RIKEN CAGE Loc

RNA Subcellular CAGE Localization from ENCODE/RIKEN

Sestan Brain

Sestan Lab Human Brain Atlas Microarrays

Regulation

ENCODE Regulation

Integrated Regulation from ENCODE

Txn Fac ChIP V2

Transcription Factor ChIP-seq from ENCODE (V2)

Txn Factor ChIP

Transcription Factor ChIP-seq Clusters (161 factors) from ENCODE with Factorbook Motifs

Txn Factr ChIP E3

Transcription Factor ChIP-seq Clusters (338 factors, 130 cell types) from ENCODE 3

DNase Clusters

DNaseI Hypersensitivity Clusters in 125 cell types from ENCODE (V3)

Layered H3K27Ac

H3K27Ac Mark (Often Found Near Active Regulatory Elements) on 7 cell lines from ENCODE

Layered H3K4Me3

H3K4Me3 Mark (Often Found Near Promoters) on 7 cell lines from ENCODE

Layered H3K4Me1

H3K4Me1 Mark (Often Found Near Regulatory Elements) on 7 cell lines from ENCODE

Transcription

Transcription Levels Assayed by RNA-seq on 9 Cell Lines from ENCODE

DNA Methylation

Human Methylation Atlas Signals

Human Methylation Atlas WGBS cell type signals

Human Methylation Atlas Summary

Human Methylation Atlas summary regions and enhancers

CD34 DnaseI

Eur. Inst. Oncology/J. C. Venter Inst. Nuclease Accessible Sites

CpG Islands

CpG Islands (Islands < 300 Bases are Light Green)

Unmasked CpG

CpG Islands on All Sequence (Islands < 300 Bases are Light Green)

CpG Islands

CpG Islands (Islands < 300 Bases are Light Green)

ENC Chromatin

ENCODE Chromatin Interactions

UW 5C

Downloads

Chromatin Interactions by 5C from ENCODE/University of Washington

UMass 5C

Chromatin Interactions by 5C from ENCODE/Dekker Univ. Mass.

GIS ChIA-PET

Chromatin Interaction Analysis Paired-End Tags (ChIA-PET) from ENCODE/GIS-Ruan

ENC DNA Methyl

ENCODE DNA Methylation

HAIB Methyl450

CpG Methylation by Methyl 450K Bead Arrays from ENCODE/HAIB

HAIB Methyl RRBS

DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha

ENC DNase/FAIRE

ENCODE Open Chromatin by DNaseI HS and FAIRE

UW DNaseI HS

DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington

UW DNaseI DGF

DNaseI Digital Genomic Footprinting from ENCODE/University of Washington

UNC FAIRE

Open Chromatin by FAIRE from ENCODE/OpenChrom(UNC Chapel Hill)

Duke DNaseI HS

Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)

Open Chrom Synth

DNaseI/FAIRE/ChIP Synthesis from ENCODE/OpenChrom(Duke/UNC/UTA)

Uniform DNaseI HS

DNaseI Hypersensitivity Uniform Peaks from ENCODE/Analysis

Master DNaseI HS

DNaseI Hypersensitive Site Master List (125 cell types) from ENCODE/Analysis

ENC Histone

ENCODE Histone Modification

UW Histone

Histone Modifications by ChIP-seq from ENCODE/University of Washington

SYDH Histone

Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard

Broad Histone

Histone Modifications by ChIP-seq from ENCODE/Broad Institute

Broad ChromHMM

Chromatin State Segmentation by HMM from ENCODE/Broad

ENC RNA Binding

ENCODE RNA Binding Proteins

SUNY RIP-seq

RIP-seq from ENCODE/SUNY Albany

SUNY RIP Tiling

RNA Binding Protein Associated RNA by Tiling Array from ENCODE/SUNY Albany

SUNY RIP GeneST

RNA Binding Protein Associated RNA by RIP-chip GeneST from ENCODE/SUNY Albany

ENC TF Binding

ENCODE Transcription Factor Binding

Uniform TFBS

Transcription Factor ChIP-seq Uniform Peaks from ENCODE/Analysis

ENCODE 3 TFBS

Transcription Factor ChIP-seq Peaks (338 factors in 130 cell types) from ENCODE 3

UW CTCF Binding

CTCF Binding Sites by ChIP-seq from ENCODE/University of Washington

UTA TFBS

Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)

UChicago TFBS

Transcription Factor Binding Sites by Epitope-Tag from ENCODE/UChicago

SYDH TFBS

Transcription Factor Binding Sites by ChIP-seq from ENCODE/Stanford/Yale/USC/Harvard

HAIB TFBS

Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB

FANTOM5

FANTOM5: Mapped transcription start sites (TSS) and their usage

TSS activity (TPM)

FANTOM5: TSS activity per sample (TPM)

TSS activity - read counts

FANTOM5: TSS activity per sample read counts

FANTOM CAT

FANTOM5: atlas of human long non-coding RNAs with accurate 5' ends

Max counts of CAGE reads

FANTOM5: Max counts of CAGE reads

Total counts of CAGE reads

FANTOM5: Total counts of CAGE reads

TSS peaks

FANTOM5: DPI peak, robust set

Enhancer - promoter correlations distances organ

FANTOM5: Enhancer - promoter correlations distances organ

Enhancer - promoter correlations distances cell type

FANTOM5: Enhancer - promoter correlations distances cell type

FANTOM-NET Enhancers

FANTOM5: FANTOM-NET Enhancers

Enhancers

FANTOM5: Enhancers

FSU Repli-chip

Replication Timing by Repli-chip from ENCODE/FSU

Genome Segments

Genome Segmentations from ENCODE

GTEx Combined eQTL

Combined Expression QTLs from 44 Tissues from GTEx (midpoint release, V6)

GTEx Tissue eQTL

Expression QTLs in 44 tissues from GTEx (midpoint release, V6)

JASPAR Transcription Factors

JASPAR Transcription Factor Binding Site Database

NKI Nuc Lamina

NKI Nuclear Lamina Associated Domains (LaminB1 DamID)

NKI LADs (Tig3)

NKI LADs (Lamina Associated Domains, Tig3 cells)

LaminB1 (Tig3)

NKI LaminB1 DamID Map (log2-ratio scores, Tig3 cells)

ORegAnno

Regulatory elements from ORegAnno

Rao 2014 Hi-C

Hi-C on 7 cell lines from Rao 2014

ReMap ChIP-seq

ReMap Atlas of Regulatory Regions

Stanf Nucleosome

Nucleosome Position by MNase-seq from ENCODE/Stanford/BYU

SUNY SwitchGear

RNA Binding Protein Associated RNA by SwitchGear from ENCODE/SUNY Albany

SwitchGear TSS

SwitchGear Genomics Transcription Start Sites

TFBS Conserved

HMR Conserved Transcription Factor Binding Sites

TS miRNA Targets

TargetScan predicted microRNA target sites

TS miRNA v7.2

Predicted microRNA Target Sites from TargetScanHuman 7.2 (March 2018)

TS miRNA sites

TargetScan miRNA Regulatory Sites (Release 5.1, April 2009)

UCSF Brain Methyl

UCSF Brain DNA Methylation

UMMS Brain Hist

Brain Histone H3K4me3 ChIP-Seq from Univ. Mass. Medical School (Akbarian/Weng)

UW Repli-seq

Replication Timing by Repli-seq from ENCODE/University of Washington

VISTA Enhancers

Comparative Genomics

Conservation

Vertebrate Multiz Alignment & Conservation (100 Species)

Cons 46-Way

Vertebrate Multiz Alignment & Conservation (46 Species)

Cons Indels MmCf

Indel-based Conservation for Human hg19, Mouse mm8 and Dog canFam2

Evo Cpg

Weizmann Evolutionary CpG Islands

GERP

GERP Scores for Mammalian Alignments

phastBias gBGC

phastBias gBGC predictions

Primate Chain/Net

Primate Genomes, Chain and Net Alignments

Placental Chain/Net

Non-primate Placental Mammal Genomes, Chain and Net Alignments

Vertebrate Chain/Net

Non-placental Vertebrate Genomes, Chain and Net Alignments

CHM13 alignments

CHM13 (GCA_009914755.4) v1_nfLO liftOver alignments

Neandertal Assembly and Analysis

Denisova Assembly and Analysis

Repeats

RepeatMasker

Repeating Elements by RepeatMasker

Interrupted Rpts

Fragments of Interrupted Repeats Joined by RepeatMasker ID

Microsatellite

Microsatellites - Di-nucleotide and Tri-nucleotide Repeats

NumtS Sequence

Human NumtS mitochondrial sequence

Segmental Dups

Duplications of >1000 Bases of Non-RepeatMasked Sequence

Self Alignment

Human Chained Self Alignments

Simple Repeats

Simple Tandem Repeats by TRF

WM + SDust

Genomic Intervals Masked by WindowMasker + SDust