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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Chicken Mar. 2018 (GRCg6a/galGal6)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq gene predictions from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR 10K CRISPR/Cas9 Sp. Pyog. target sites (exons +/- 10,000 bp)
     CRISPR Targets 10K     CRISPR/Cas9 -NGG Targets (exons +/- 10,000 bp)
     CRISPR Regions 10K     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 10,000 bp)
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Chicken RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Chicken ESTs Chicken ESTs Including Unspliced
Chicken mRNAs Chicken mRNAs from GenBank
Other mRNAs Non-Chicken mRNAs from GenBank
Spliced ESTs Chicken ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
updated JASPAR Transcription Factors JASPAR Transcription Factor Binding Site Database
-   Comparative Genomics    
Conservation Vertebrate Multiz Alignment & Conservation (77 Species)
Birds Chain/Net Birds Chain and Net Alignments
Fish Chain/Net Fish Chain and Net Alignments
Vertebrate Chain/Net Vertebrate Chain and Net Alignments
Chicken Chain/Net Chicken (Jan. 2021 (GRCg7b/GCF_016699485.2)), Chain and Net Alignments
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust