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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: P. pacificus Feb. 2007 (WUGSC 5.0/priPac1)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Contigs Assembly Contigs
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Quality Scores P. pacificus Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Other RefSeq Non-P. pacificus RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UniProt UniProt SwissProt/TrEMBL Protein Annotations
C.elegans Prot. C. elegans Proteins WS190 Mapped by Chained tBLASTn
-   mRNA and EST    
Spliced ESTs P. pacificus ESTs That Have Been Spliced
P. pacificus ESTs P. pacificus ESTs Including Unspliced
P. pacificus mRNAs P. pacificus mRNAs from GenBank
-   Comparative Genomics    
C. briggsae Chain C. briggsae (Jan. 2007 (WUGSC 1.0/cb3)) Chained Alignments
C. briggsae Net C. briggsae (Jan. 2007 (WUGSC 1.0/cb3)) Alignment Net
C. remanei Chain C. remanei (Mar. 2006 (WUGSC 1.0/caeRem2)) Chained Alignments
C. remanei Net C. remanei (Mar. 2006 (WUGSC 1.0/caeRem2)) Alignment Net
C. brenneri Chain C. brenneri (Jan. 2007 (WUGSC 4.0/caePb1)) Chained Alignments
C. brenneri Net C. brenneri (Jan. 2007 (WUGSC 4.0/caePb1)) Alignment Net
C. elegans Chain C. elegans (May 2008 (WS190/ce6)) Chained Alignments
C. elegans Net C. elegans (May 2008 (WS190/ce6)) Alignment Net
-   Variation and Repeats    
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
RepeatMasker Repeating Elements by RepeatMasker