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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Fugu Oct. 2011 (FUGU5/fr3)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Scaffolds Assembly Scaffolds
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Spliced ESTs Fugu ESTs That Have Been Spliced
Fugu ESTs Fugu ESTs Including Unspliced
Fugu mRNAs Fugu mRNAs from GenBank
Other mRNAs Non-Fugu mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (8 Species)
Nile tilapia Chain/Net Nile tilapia (Jan. 2011 (Broad oreNil1.0/oreNil1)), Chain and Net Alignments
Chicken Chain/Net Chicken (Mar. 2018 (GRCg6a/galGal6)), Chain and Net Alignments
Tetraodon Chain/Net Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)), Chain and Net Alignments
Medaka Chain/Net Medaka (Oct. 2005 (NIG/UT MEDAKA1/oryLat2)), Chain and Net Alignments
Stickleback Chain/Net Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments
Atlantic cod Chain/Net Atlantic cod (May 2010 (Genofisk GadMor_May2010/gadMor1)), Chain and Net Alignments
Zebrafish Chain/Net Zebrafish (Jul. 2010 (Zv9/danRer7)), Chain and Net Alignments
Coelacanth Chain/Net Coelacanth (Aug. 2011 (Broad/latCha1)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust