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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Zebrafish Sep. 2014 (GRCz10/danRer10)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR Targets CRISPR/Cas9 -NGG Targets, whole genome
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Zebrafish RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
ZGC Genes Zebrafish Gene Collection Full ORF mRNAs
-   mRNA and EST    
Other mRNAs Non-Zebrafish mRNAs from GenBank
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (12 Species)
Turkey Chain/Net Turkey (Nov. 2014 (Turkey_5.0/melGal5)), Chain and Net Alignments
Chicken Chain/Net Chicken (Dec 2015 (Gallus_gallus-5.0/galGal5)), Chain and Net Alignments
Rat Chain/Net Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
UniProt Variants UniProt/SwissProt Amino Acid Substitutions
WM + SDust Genomic Intervals Masked by WindowMasker + SDust