Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| STS Markers |
| STS Markers on Genetic and Radiation Hybrid Maps |
| Assembly |
| Assembly from Fragments |
| BAC End Pairs |
| BAC End Pairs |
| Chromosome Band |
| Chromosome Bands Based On ISCN Lengths |
| GC Percent |
| GC Percent in 5-Base Windows |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| RGD QTL |
| Rat Quantitative Trait Locus from RGD |
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| N-SCAN |
| N-SCAN Gene Predictions |
| Other RefSeq |
| Non-Rat RefSeq Genes |
| RefSeq Genes |
| RefSeq Genes |
| RGD Genes |
| RGD Genes |
| SGP Genes |
| SGP Gene Predictions Using Rat/Human Homology |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| CONTRAST |
| CONTRAST Gene Predictions |
| Ensembl Genes |
| Ensembl Genes |
| Geneid Genes |
| Geneid Gene Predictions |
| Genscan Genes |
| Genscan Gene Predictions |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| miRNA |
| MicroRNAs from miRBase |
| Old Known Genes |
| Previous Version of Known Genes |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
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| Publications |
| Publications: Sequences in Scientific Articles |
| Web Sequences |
| DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research |
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| Rat mRNAs |
| Rat mRNAs from GenBank |
| Spliced ESTs |
| Rat ESTs That Have Been Spliced |
| Other mRNAs |
| Non-Rat mRNAs from GenBank |
| PolyA-Seq |
| Poly(A)-sequencing from Merck Research Laboratories |
| Rat ESTs |
| Rat ESTs Including Unspliced |
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| Affy Exon |
| Affymetrix All Exon Microarrays |
| Affy Exon Tissues |
| Affymetrix Exon Array 1.0: Normal Tissues |
| Affy Exon Probes |
| Affymetrix Exon Array 1.0: Probesets |
| Affy RAE230 |
| Alignments of Affymetrix Consensus Sequences from RAE230 |
| Affy RG-U34A |
| Alignments of Affymetrix Exemplar Sequences from RG-U34A |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| CpG Islands (AL) |
| CpG Islands - Andy Law, Masked Sequence (Islands < 300 Bases are Light Green) |
| GNF Atlas 2 |
| GNF Rat U34A Expression Atlas 2 |
| NHGRI BiP |
| ENCODE NHGRI Elnitski Bidirectional Promoters |
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| Conservation |
| 9-Way Multiz Alignment & Conservation |
| Mouse Chain/Net |
| Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments |
| Guinea pig Chain/Net |
| Guinea pig (Feb. 2008 (Broad/cavPor3)), Chain and Net Alignments |
| Rhesus Chain/Net |
| Rhesus (Jan. 2006 (MGSC Merged 1.0/rheMac2)), Chain and Net Alignments |
| panTro2 Chain/Net |
| Chimp (Mar. 2006 (CGSC 2.1/panTro2)), Chain and Net Alignments |
| Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
| Panda Chain/Net |
| Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)), Chain and Net Alignments |
| Dog Chain/Net |
| Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments |
| Horse Chain/Net |
| Horse (Jan. 2007 (Broad/equCab1)), Chain and Net Alignments |
| Cow Chain/Net |
| Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)), Chain and Net Alignments |
| Opossum Chain/Net |
| Opossum (Jan. 2006 (Broad/monDom4)), Chain and Net Alignments |
| Chicken Chain/Net |
| Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments |
| Turkey Chain/Net |
| Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)), Chain and Net Alignments |
| X. tropicalis Chain/Net |
| X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)), Chain and Net Alignments |
| Zebrafish Chain/Net |
| Zebrafish (Mar. 2006 (Zv6/danRer4)), Chain and Net Alignments |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
| SNPs |
| Simple Nucleotide Polymorphisms (dbSNP build 125) |
| Agilent CGH |
| Agilent CGH Microarray probesets |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
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