Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Scaffolds |
| Assembly Scaffolds |
| Assembly |
| Assembly from Fragments |
| Gap |
| Gap Locations |
| GC Percent |
| GC Percent in 5-Base Windows |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| Ensembl Genes |
| Ensembl Genes (lifted to susScr2 from Ensembl version Sscrofa9) |
| Human Proteins |
| Human Proteins Mapped by Chained tBLASTn |
| N-SCAN |
| N-SCAN Gene Predictions |
| Other RefSeq |
| Non-Pig RefSeq Genes |
| tRNA Genes |
| Transfer RNA Genes Identified with tRNAscan-SE |
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| Other mRNAs |
| Non-Pig mRNAs from GenBank |
| Pig ESTs |
| Pig ESTs Including Unspliced |
| Pig mRNAs |
| Pig mRNAs from GenBank |
| Spliced ESTs |
| Pig ESTs That Have Been Spliced |
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| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
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| Mouse Chain/Net |
| Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments |
| Cow Chain/Net |
| Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)), Chain and Net Alignments |
| Human Chain/Net |
| Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments |
| Opossum Chain/Net |
| Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| NumtS Sequence |
| Pig NumtS Mitochondrial Sequence |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
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