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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Chimp Mar. 2006 (CGSC 2.1/panTro2)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
GC Percent GC Percent in 5-Base Windows
Quality Scores Chimp Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
N-SCAN N-SCAN Gene Predictions
Other RefSeq Non-Chimp RefSeq Genes
RefSeq Genes RefSeq Genes
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   mRNA and EST    
Chimp mRNAs Chimp mRNAs from GenBank
Spliced ESTs Chimp ESTs That Have Been Spliced
Chimp ESTs Chimp ESTs Including Unspliced
Other mRNAs Non-Chimp mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
NHGRI BiP ENCODE NHGRI Elnitski Bidirectional Promoters
-   Comparative Genomics    
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Orangutan Chain/Net Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments
Rhesus Chain/Net Rhesus (Jan. 2006 (MGSC Merged 1.0/rheMac2)), Chain and Net Alignments
Marmoset Chain/Net Marmoset (March 2009 (WUGSC 3.2/calJac3)), Chain and Net Alignments
Rat Chain/Net Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Dog Chain/Net Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments
Horse Chain/Net Horse (Jan. 2007 (Broad/equCab1)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Chicken Chain/Net Chicken (Feb. 2004 (WUGSC 1.0/galGal2)), Chain and Net Alignments
Zebrafish Chain/Net Zebrafish (Mar. 2006 (Zv6/danRer4)), Chain and Net Alignments
-   Neandertal Assembly and Analysis    
Neandertal Cntgs Neandertal Sequence Contigs Generated by Genotype Caller
Neandertal Seq Neandertal Sequence Reads
-   Denisova Assembly and Analysis    
Denisova Denisova Sequence Reads
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF