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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Marmoset March 2009 (WUGSC 3.2/calJac3)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Gap Gap Locations
Assembly Assembly from Fragments
Bac End Singles Marmoset BAC End singletons, without end pair
Bac Ends Marmoset BAC Ends
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
Quality Scores Marmoset Sequencing Quality Scores
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Scaffolds Assembly Scaffolds
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
N-SCAN N-SCAN Gene Predictions
NCBI RefSeq RefSeq genes from NCBI
Other RefSeq Non-Marmoset RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
-   mRNA and EST    
Marmoset ESTs Marmoset ESTs Including Unspliced
Marmoset mRNAs Marmoset mRNAs from GenBank
Other mRNAs Non-Marmoset mRNAs from GenBank
Spliced ESTs Marmoset ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Conservation Vertebrate Multiz Alignment & Conservation (13 Species)
Baboon Chain/Net Baboon (Nov. 2008 (Baylor Pham_1.0/papHam1)), Chain and Net Alignments
Rhesus Chain/Net Rhesus (Oct. 2010 (BGI CR_1.0/rheMac3)), Chain and Net Alignments
Orangutan Chain/Net Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments
Gorilla Chain/Net Gorilla (May 2011 (gorGor3.1/gorGor3)), Chain and Net Alignments
Chimp Chain/Net Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments
hg19 Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
hg38 Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
Tarsier Chain/Net Tarsier (Sep. 2013 (Tarsius_syrichta-2.0.1/tarSyr2)), Chain and Net Alignments
Mouse lemur Chain/Net Mouse lemur (Jul. 2007 (Broad/micMur1)), Chain and Net Alignments
Mouse Chain/Net Mouse (July 2007 (NCBI37/mm9)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Dog Chain/Net Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF