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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Opossum Oct. 2006 (Broad/monDom5)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Quality Scores Opossum Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Human Proteins Human Proteins Mapped by Chained tBLASTn
N-SCAN N-SCAN Gene Predictions
Other RefSeq Non-Opossum RefSeq Genes
TOGA vs. hg38 TOGA annotations using human/hg38 as reference
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Opossum ESTs Opossum ESTs Including Unspliced
Opossum mRNAs Opossum mRNAs from GenBank
Other mRNAs Non-Opossum mRNAs from GenBank
Spliced ESTs Opossum ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Conservation 9-Way Multiz Alignment & Conservation
Elephant Chain/Net Elephant (Jul. 2009 (Broad/loxAfr3)), Chain and Net Alignments
Panda Chain/Net Panda (Dec. 2009 (BGI-Shenzhen 1.0/ailMel1)), Chain and Net Alignments
Dog Chain/Net Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments
Cat Chain/Net Cat (Dec. 2008 (NHGRI/GTB V17e/felCat4)), Chain and Net Alignments
White rhinoceros Chain/Net White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)), Chain and Net Alignments
Horse Chain/Net Horse (Sep. 2007 (Broad/equCab2)), Chain and Net Alignments
Sheep Chain/Net Sheep (Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1)), Chain and Net Alignments
Cow Chain/Net Cow (Oct. 2011 (Baylor Btau_4.6.1/bosTau7)), Chain and Net Alignments
Pig Chain/Net Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)), Chain and Net Alignments
Mouse Chain/Net Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments
Rabbit Chain/Net Rabbit (Apr. 2009 (Broad/oryCun2)), Chain and Net Alignments
Rat Chain/Net Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments
Hawaiian monk seal Chain/Net Hawaiian monk seal (Jun. 2017 (ASM220157v1/neoSch1)), Chain and Net Alignments
mm10 ChainNet Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Marmoset Chain/Net Marmoset (March 2009 (WUGSC 3.2/calJac3)), Chain and Net Alignments
Rhesus Chain/Net Rhesus (Oct. 2010 (BGI CR_1.0/rheMac3)), Chain and Net Alignments
Orangutan Chain/Net Orangutan (July 2007 (WUGSC 2.0.2/ponAbe2)), Chain and Net Alignments
Chimp Chain/Net Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments
hg19 ChainNet Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Platypus Chain/Net Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments
Turkey Chain/Net Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)), Chain and Net Alignments
Chicken Chain/Net Chicken (May 2006 (WUGSC 2.1/galGal3)), Chain and Net Alignments
Turkey Chain/Net Turkey (Nov. 2014 (Turkey_5.0/melGal5)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Nov. 2009 (JGI 4.2/xenTro3)), Chain and Net Alignments
Zebrafish Chain/Net Zebrafish (July 2007 (Zv7/danRer5)), Chain and Net Alignments
Lamprey Chain/Net Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust