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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Zebrafish Jul. 2010 (Zv9/danRer7)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Contigs Assembly Contigs
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
CRISPR CRISPR/Cas9 Sp. Pyog. target sites
     CRISPR Targets     CRISPR/Cas9 -NGG Targets
     CRISPR Regions     Genome regions processed to find CRISPR/Cas9 target sites (exons +/- 200 bp)
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Human Proteins Human Proteins Mapped by Chained tBLASTn
Other RefSeq Non-Zebrafish RefSeq Genes
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UniProt UniProt SwissProt/TrEMBL Protein Annotations
ZGC Genes Zebrafish Gene Collection Full ORF mRNAs
-   Literature    
Web Sequences DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
-   mRNA and EST    
Other mRNAs Non-Zebrafish mRNAs from GenBank
Spliced ESTs Zebrafish ESTs That Have Been Spliced
Zebrafish ESTs Zebrafish ESTs Including Unspliced
Zebrafish mRNAs Zebrafish mRNAs from GenBank
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
UMass ChIP-Seq U Mass ChIP-Seq
-   Comparative Genomics    
Conservation Multiz Alignment & Conservation (8 Species)
Fish Chain/Net Fish Genomes, Chain and Net Alignments
Vertebrate Chain/Net Vertebrate Genomes, Chain and Net Alignments
Turkey Chain/Net Turkey (Dec. 2009 (TGC Turkey_2.01/melGal1)), Chain and Net Alignments
Chimp Chain/Net Chimp (Oct. 2010 (CGSC 2.1.3/panTro3)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF