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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Scaffolds Assembly Scaffolds and Ultracontigs
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
Quality Scores Medaka Sequencing Quality Scores
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Human Proteins Human Proteins Mapped by Chained tBLASTn
Other RefSeq Non-Medaka RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
tRNA Genes Transfer RNA Genes Identified with tRNAscan-SE
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   Literature    
Publications Publications: Sequences in Scientific Articles
Web Sequences DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
-   mRNA and EST    
Medaka ESTs Medaka ESTs Including Unspliced
Medaka mRNAs Medaka mRNAs from GenBank
Other mRNAs Non-Medaka mRNAs from GenBank
Spliced ESTs Medaka ESTs That Have Been Spliced
-   Comparative Genomics    
Conservation 5-Way Multiz Alignment & Conservation
Chicken Chain/Net Chicken (Mar. 2018 (GRCg6a/galGal6)), Chain and Net Alignments
Stickleback Chain/Net Stickleback (Feb. 2006 (Broad/gasAcu1)), Chain and Net Alignments
Fugu Chain/Net Fugu (Oct. 2011 (FUGU5/fr3)), Chain and Net Alignments
Tetraodon Chain/Net Tetraodon (Mar. 2007 (Genoscope 8.0/tetNig2)), Chain and Net Alignments
Zebrafish Chain/Net Zebrafish (Jul. 2010 (Zv9/danRer7)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Lamprey Chain/Net Lamprey (Sep. 2010 (WUGSC 7.0/petMar2)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust