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Configure Image - Genome Browser V501
 
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Configure Tracks on UCSC Genome Browser: Cow Oct. 2011 (Baylor Btau_4.6.1/bosTau7)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Scaffolds Assembly Scaffolds
Assembly Assembly from Fragments
Cow QTL Cow Quantitative Trait Loci from animalQTLdb
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
RefSeq Genes RefSeq Genes
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Cow RefSeq Genes
-   Literature    
Web Sequences DNA Sequences in Web Pages Indexed by Bing.com / Microsoft Research
-   mRNA and EST    
Cow ESTs Cow ESTs Including Unspliced
Cow mRNAs Cow mRNAs from GenBank
Other mRNAs Non-Cow mRNAs from GenBank
Spliced ESTs Cow ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
-   Comparative Genomics    
Pig Chain/Net Pig (Nov. 2009 (SGSC Sscrofa9.2/susScr2)), Chain and Net Alignments
Dog Chain/Net Dog (May 2005 (Broad/canFam2)), Chain and Net Alignments
White rhinoceros Chain/Net White rhinoceros (May 2012 (CerSimSim1.0/cerSim1)), Chain and Net Alignments
Rat Chain/Net Rat (Nov. 2004 (Baylor 3.4/rn4)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Dolphin Chain/Net Dolphin (Oct. 2011 (Baylor Ttru_1.4/turTru2)), Chain and Net Alignments
Alpaca Chain/Net Alpaca (Jul. 2008 (Broad/vicPac1)), Chain and Net Alignments
Human Chain/Net Human (Feb. 2009 (GRCh37/hg19)), Chain and Net Alignments
Opossum Chain/Net Opossum (Oct. 2006 (Broad/monDom5)), Chain and Net Alignments
Platypus Chain/Net Platypus (Mar. 2007 (WUGSC 5.0.1/ornAna1)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
All SNPs(138) Simple Nucleotide Polymorphisms (dbSNP 138)
Common SNPs(138) Simple Nucleotide Polymorphisms (dbSNP 138) Found in >= 1% of Samples
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Mult. SNPs(138) Simple Nucleotide Polymorphisms (dbSNP 138) That Map to Multiple Genomic Loci
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust