Control track and group visibility more selectively below.
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| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Locations |
| Assembly |
| Assembly from Fragments |
| Chromosome Band |
| Chromosome Bands Based On ISCN Lengths |
| Clone Ends |
| Mapping of clone libraries end placements |
| GC Percent |
| GC Percent in 5-Base Windows |
| INSDC |
| Accession at INSDC - International Nucleotide Sequence Database Collaboration |
| RefSeq Acc |
| RefSeq Accession |
| Restr Enzymes |
| Restriction Enzymes from REBASE |
| Short Match |
| Perfect Matches to Short Sequence () |
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| Other RefSeq |
| Non-Rat RefSeq Genes |
| NCBI RefSeq |
| RefSeq genes from NCBI |
| AUGUSTUS |
| AUGUSTUS ab initio gene predictions v3.1 |
| Ensembl Genes |
| Ensembl Genes |
| Geneid Genes |
| Geneid Gene Predictions |
| Genscan Genes |
| Genscan Gene Predictions |
| MGC Genes |
| Mammalian Gene Collection Full ORF mRNAs |
| SGP Genes |
| SGP Gene Predictions Using Rat/Human Homology |
| TOGA vs. hg38 |
| TOGA annotations using human/hg38 as reference |
| TransMap V5 |
| TransMap Alignments Version 5 |
| TransMap ESTs |
| TransMap EST Mappings Version 5 |
| TransMap RNA |
| TransMap GenBank RNA Mappings Version 5 |
| TransMap RefGene |
| TransMap RefSeq Gene Mappings Version 5 |
| TransMap Ensembl |
| TransMap Ensembl and GENCODE Mappings Version 5 |
| UniProt |
| UniProt SwissProt/TrEMBL Protein Annotations |
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| Rat mRNAs |
| Rat mRNAs from GenBank |
| Spliced ESTs |
| Rat ESTs That Have Been Spliced |
| Other mRNAs |
| Non-Rat mRNAs from GenBank |
| Rat ESTs |
| Rat ESTs Including Unspliced |
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| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| Unmasked CpG |
| CpG Islands on All Sequence (Islands < 300 Bases are Light Green) |
| CpG Islands |
| CpG Islands (Islands < 300 Bases are Light Green) |
| FANTOM5 |
| FANTOM5 |
| TSS activity(TPM) |
| TSS activity per sample(TPM) |
| TSS activity(read counts) |
| TSS activity per sample(read counts) |
| Max counts |
| Max counts of CAGE reads |
| Total counts |
| Total counts of CAGE reads |
| TSS peaks |
| FANTOM5 DPI peak, robust set |
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| Conservation |
| Multiz Alignment & Conservation (20 Species) |
| Chains/Nets |
| Chain and Net Alignments |
| ClinVar Lift |
| Human ClinVar variants lifted to Rat |
| Mouse Chain/Net |
| Mouse (Jun. 2020 (GRCm39/mm39)), Chain and Net Alignments |
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| RepeatMasker |
| Repeating Elements by RepeatMasker |
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EVA SNP |
| Short Genetic Variants from European Variant Archive |
| Interrupted Rpts |
| Fragments of Interrupted Repeats Joined by RepeatMasker ID |
| Microsatellite |
| Microsatellites - Di-nucleotide and Tri-nucleotide Repeats |
| Simple Repeats |
| Simple Tandem Repeats by TRF |
| UniProt Variants |
| UniProt/SwissProt Amino Acid Substitutions |
| WM + SDust |
| Genomic Intervals Masked by WindowMasker + SDust |
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