Skip to main content
Configure Image - Genome Browser V501
 
Image width:pixels
Label area width:characters
Text size:
Font:
Style:
Maximum track load time: seconds
Display chromosome ideogram above main graphic
Show light blue vertical guidelines, or light red vertical window separators in multi-region view
Display labels to the left of items in tracks
Display description above each track
Show track controls under main graphic
Next/previous item navigation
Next/previous exon navigation
Show exon numbers
Show move left/right limit buttons under image
Enable highlight with drag-and-select (if unchecked, drag-and-select always zooms to selection)
Enable pop-up when clicking items

Configure Tracks on UCSC Genome Browser: Chicken Dec 2015 (Gallus_gallus-5.0/galGal5)
  Tracks:    Groups:
Control track and group visibility more selectively below.
-   Mapping and Sequencing    
Base Position Chromosome position in bases. (Clicks here zoom in 3x)
Assembly Assembly from Fragments
Gap Gap Locations
GC Percent GC Percent in 5-Base Windows
GRC Incident GRC Incident Database
INSDC Accession at INSDC - International Nucleotide Sequence Database Collaboration
RefSeq Acc RefSeq Accession
Restr Enzymes Restriction Enzymes from REBASE
Short Match Perfect Matches to Short Sequence ()
-   Genes and Gene Predictions    
NCBI RefSeq RefSeq genes from NCBI
AUGUSTUS AUGUSTUS ab initio gene predictions v3.1
Ensembl Genes Ensembl Genes
Genscan Genes Genscan Gene Predictions
Other RefSeq Non-Chicken RefSeq Genes
TransMap V5 TransMap Alignments Version 5
     TransMap ESTs     TransMap EST Mappings Version 5
     TransMap RNA     TransMap GenBank RNA Mappings Version 5
     TransMap RefGene     TransMap RefSeq Gene Mappings Version 5
     TransMap Ensembl     TransMap Ensembl and GENCODE Mappings Version 5
UniProt UniProt SwissProt/TrEMBL Protein Annotations
-   mRNA and EST    
Chicken ESTs Chicken ESTs Including Unspliced
Chicken mRNAs Chicken mRNAs from GenBank
Other mRNAs Non-Chicken mRNAs from GenBank
Spliced ESTs Chicken ESTs That Have Been Spliced
-   Expression and Regulation    
CpG Islands CpG Islands (Islands < 300 Bases are Light Green)
     Unmasked CpG     CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
     CpG Islands     CpG Islands (Islands < 300 Bases are Light Green)
FANTOM5 FANTOM5
     TSS activity(TPM)     TSS activity per sample(TPM)
     TSS activity(read counts)     TSS activity per sample(read counts)
     Max counts     Max counts of CAGE reads
     Total counts     Total counts of CAGE reads
     TSS peaks     FANTOM5 DPI peak, robust set
-   Comparative Genomics    
Golden eagle Chain/Net Golden eagle (Oct. 2014 (aquChr-1.0.2/aquChr2)), Chain and Net Alignments
Rat Chain/Net Rat (Jul. 2014 (RGSC 6.0/rn6)), Chain and Net Alignments
Mouse Chain/Net Mouse (Dec. 2011 (GRCm38/mm10)), Chain and Net Alignments
Human Chain/Net Human (Dec. 2013 (GRCh38/hg38)), Chain and Net Alignments
Turkey Chain/Net Turkey (Nov. 2014 (Turkey_5.0/melGal5)), Chain and Net Alignments
X. tropicalis Chain/Net X. tropicalis (Jul. 2016 (Xenopus_tropicalis_v9.1/xenTro9)), Chain and Net Alignments
Zebrafish Chain/Net Zebrafish (Sep. 2014 (GRCz10/danRer10)), Chain and Net Alignments
-   Variation and Repeats    
RepeatMasker Repeating Elements by RepeatMasker
All SNPs(147) Simple Nucleotide Polymorphisms (dbSNP 147)
updated EVA SNP Short Genetic Variants from European Variant Archive
Interrupted Rpts Fragments of Interrupted Repeats Joined by RepeatMasker ID
Microsatellite Microsatellites - Di-nucleotide and Tri-nucleotide Repeats
Mult. SNPs(147) Simple Nucleotide Polymorphisms (dbSNP 147) That Map to Multiple Genomic Loci
Simple Repeats Simple Tandem Repeats by TRF
WM + SDust Genomic Intervals Masked by WindowMasker + SDust