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Rangan RNA Track Settings
 
Rangan et al. RNA predictions   (All mRNA and EST tracks)

Display mode:      Duplicate track

Data schema/format description and download
Assembly: SARS-CoV-2 Jan. 2020 (NC_045512.2)
Data last updated at UCSC: 2020-05-04

Description

This track shows the locations of RNA structure predictions reported in Rangan et al. bioRxiv 2020 as well as recognizable matches to Rfam annotations found at https://rfam.xfam.org/search?q=coronavirus.

Display Conventions and Configuration

At zoomed out positions, RNA structure is indicated by dark (stem) and light (loops and single strands) green color bars. Zooming in to base level displays the prediction in "extended dot-bracket" notation.

Credits

This track was created by UCSC undergraduate students Justin Sim and Alinne Gonzalez Armenta with the indispensable assistance of Brian Raney.

References

Rangan Ramya, Zheludev Ivan N., Das Rhiju, 2020. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses. bioRxiv