Skip to main content
Schema for ensPep
  Database: loxAfr3    Primary Table: ensPep    Row Count: 25,635   Data last updated: 2021-05-25
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENSLAFT00000000001.4varchar(255) values Name of gene
seq LRRGLPALARRAEPQLLRLRPTSLRSQ...longblob   mRNA sequence

Connected Tables and Joining Fields
        knownGeneV39.knownToEnsembl.value (via ensPep.name)
      loxAfr3.ensGene.name (via ensPep.name)
      loxAfr3.ensGtp.transcript (via ensPep.name)
      loxAfr3.ensemblSource.name (via ensPep.name)
      loxAfr3.ensemblToGeneName.name (via ensPep.name)

Sample Rows
 
nameseq
ENSLAFT00000000001.4LRRGLPALARRAEPQLLRLRPTSLRSQDVSYLLSLVFRGLYSAEAIGEHASSSLIRARGSEDARHEQFVDSLQQIRELYKQRLDEVEMVERHIIQARARAMAEEERATQQAEAQTLEASNVIKLPPVK ...
ENSLAFT00000000002.3MQRLGVVLGHLRGQPDAHPGPALRAEWCLSGAPAASAADVVVVHGRRTAIGRGGRGGFKDTTPDELLSTVLTAVLQDVGLSPAQLGDICVGNVLQPGAGAVMARIAQFLSDIPETVPLSSVNRQCSSG ...
ENSLAFT00000000003.3VLTSFSLDACGAPTRYETMKLRDPPKDHYTPGESVVYQCRLGYRIKPSFAMTAVCNDSNSWTPLQEACAKKLCSNPGDPVNGRVIQTNGTLEFGSQVDYVCDEGYRLIGEKTSYCYIYEDSVAWSSER ...
ENSLAFT00000000007.3QVSVAGSGTGRGSPAVTLVQLPSGQTVHVQGVIQTPQPSVIQSSQIQTVQVATIAETDESAESEGIIDSHKHREILSRRPSYRKILNELSSDVSGVPKIEEEKSEEEGTPPNIAPMAVPTSIYQTSTG ...
ENSLAFT00000000008.3MRATSRPAPDGGRQAGGEAVPGHAAAARPARPPGRGPRSRRAAARGALSFRGAPGPLPARARVLRGWRRATAPLSTGRAHAGGRGPRKAQYQCLVEGCEEKFKTSRDRKDHMVKRHLYPADFRFDKPK ...
ENSLAFT00000000010.3MACAVRGCSLAFICITTWLLVKAKIDVCKRGGVTVKPSHVISLGSAVNISCSLKPKQGCSSYSSSNKLILYKFYRKIHFHHGLTLSSQVTDLPLGTTVFVCKLACRSSDEIRICGAEISVGVVPEQPQ ...
ENSLAFT00000000011.3MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSAGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRP ...
ENSLAFT00000000015.3MSLKNEPRVNTSALQKIAADMSNLIENLDTRELHFEGEEVDFDVSPGDPKTHEVSIPFSAIYNTQGFKEPNIQTYLSGCPIKVKVLEVERFTSTTRVPSINVYTIELTHGEFKWQVKRKFKHFEEFHR ...
ENSLAFT00000000017.1MKSYTLYLTLLWSAVGIAKAAKIIIVPPIMFESHMYIFKTLASALHERGHHTVFLLSEGRDISPSNHYSLQRYPGIFNSTTSDAFLQSKMRNIFSGRLTAIELFDILDHYTKNCDMMVGNRALIQGLK ...
ENSLAFT00000000018.2MTPPGRILLLLMLFPVAAAQTAPCTCWGCGPLSLPLLVGLVAADAVLSLLIVGVVFMCARPRHQPTQEVDKVYINMPVRG

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.