Skip to main content
Schema for ensPep
  Database: dm3    Primary Table: ensPep    Row Count: 26,950   Data last updated: 2014-03-04
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name FBtr0005088varchar(255) values Name of gene
seq MAASDKSVDDSLYPIAVLIDELKNEDV...longblob   mRNA sequence

Connected Tables and Joining Fields
        dm3.ensGene.name (via ensPep.name)
      dm3.ensGtp.transcript (via ensPep.name)
      dm3.ensemblSource.name (via ensPep.name)
      dm3.ensemblToGeneName.name (via ensPep.name)
      knownGeneV39.knownToEnsembl.value (via ensPep.name)

Sample Rows
 
nameseq
FBtr0005088MAASDKSVDDSLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGEERTRSELIPFLTETIYDEDEVLLALADQLGNFTSLVGGPEFAMYLIPPLESLATVEETVVRDKAVESLRTVAAEHSAQDLEI ...
FBtr0005673MGVTGLWKLIEPCGKPVPVETLEGKILAVGKHRFSPPNEILADWSTFRPADISIWLHQVVKGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNKLSNEADRIQA ...
FBtr0005674MGVTGLWKLIEPCGKPVPVETLEGKILAVDISIWLHQVVKGFQDNKGSALSNAHLLGLFHRLCKLLYYRVRPVFIFDGCVPQLKRDTIARRQQQRNKLSNEADRIQALLLQSLAKEKVVQQALGKNAE ...
FBtr0006151MFDLTGKHVCYVADCGGIALETSKVLMTKNIAKLAILQSTENPQAIAQLQSIKPSTQIFFWTYDVTMAREDMKKYFDEVMVQMDYIDVLINGATLCDENNIDATINTNLTGMMNTVATVLPYMDRKMG ...
FBtr0070000MTRYKQTEFTEDDSSSIGGIQLNEATGHTGMQIRYHTARATWNWRSRNKTEKWLLITTFVMAITIFTLLIVLFTDGGSSDATKHVLHVQPHQKDCPSGNELPCLNKHCIFASSEILKSIDVTVDPCDD ...
FBtr0070002MTCTLVLLIASVLHFRMRGSCLLDIERFPVIPGTIYAGHIAYCAILYFLHDLEILPTRYRSRMGWLTTFLIELVLGVAFMEVLALWLWCSVEHILHLSTQFVLRRYLGVSTEVYQRWEWAIMGGLMTT ...
FBtr0070003MDISKVDSTRALVNHWRIFRIMGIHPPGKRTFWGRHYTAYSMVWNVTFHICIWVSFSVNLLQSNSLETFCESLCVTMPHTLYMLKLINVRRMRGEMISSHWLLRLLDKRLGCADERQIIMAGIERAEF ...
FBtr0070006MQQLLVVALVAVAIASLPQLAAGKKLGKRCVNCTYRTYYTYGDGRSLQRVVYRDPVYTRAQSYASGCSGSPCGVNAVCQEASGGRPVCSCPPGFSGNPLTHCNRGECLDNVDCRDNLQCKDNRCVNPC ...
FBtr0070007MSLSRLNTLMKLTPKPTAIGSLKMQRNLSALPESGPTGSFKTLAVSSPKPFVFHVELHRPSKFNAISKQMWLEIKECFDGLATNPDCRAIVLSASGKHFTAGIDLNDMINVGQTLAETDDYARKGVSM ...
FBtr0070008MSMEECFVPRLPVDSEFIQFHDWAIKYEKSHILKSSCQLGTAKCCPKDSADRCDLCHYQHSLQLPHLPDMVFHKNRLVLQHKDGATLEFCPMDALALVDNGKQPLEVACAQEWRETRNEQTMEEKFKP ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.