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Schema for sgdPep
  Database: sacCer1    Primary Table: sgdPep    Row Count: 5,766   Data last updated: 2003-12-31
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name YAL001Cvarchar(255) values Name of gene - same as in genePred
seq MVLTIYPDELVQIVSDKIASNKGKITL...longblob   Peptide sequence

Connected Tables and Joining Fields
        sacCer1.choExpDistance.query (via sgdPep.name)
      sacCer1.choExpDistance.target (via sgdPep.name)
      sacCer1.dmBlastTab.query (via sgdPep.name)
      sacCer1.esRegGeneToModule.gene (via sgdPep.name)
      sacCer1.esRegGeneToMotif.gene (via sgdPep.name)
      sacCer1.esRegUpstreamRegion.name (via sgdPep.name)
      sacCer1.hgBlastTab.query (via sgdPep.name)
      sacCer1.mmBlastTab.query (via sgdPep.name)
      sacCer1.rnBlastTab.query (via sgdPep.name)
      sacCer1.sgdAbundance.name (via sgdPep.name)
      sacCer1.sgdBlastTab.query (via sgdPep.name)
      sacCer1.sgdBlastTab.target (via sgdPep.name)
      sacCer1.sgdCanonical.transcript (via sgdPep.name)
      sacCer1.sgdDescription.name (via sgdPep.name)
      sacCer1.sgdGene.name (via sgdPep.name)
      sacCer1.sgdIsoforms.transcript (via sgdPep.name)
      sacCer1.sgdLocalization.name (via sgdPep.name)
      sacCer1.sgdToName.name (via sgdPep.name)
      sacCer1.sgdToPfam.name (via sgdPep.name)
      sacCer1.sgdToSwissProt.name (via sgdPep.name)

Sample Rows
 
nameseq
YAL001CMVLTIYPDELVQIVSDKIASNKGKITLNQLWDISGKYFDLSDKKVKQFVLSCVILKKDIEVYCDGAITTKNVTDIIGDANHSYSVGITEDSLWTLLTGYTKKESTIGNSAFELLLEVAKSGEKGINTM ...
YAL002WMGTSKGCVLIFNYNEHLQTILVPTLSEDPSIHSIRSPVKSIVICSDGTHVAASYETGNICIWNLNVGYRVKPTSEPTNGMTPTPALPAVLHIDDHVNKEITGLDFFGARHTALIVSDRTGKVSLYNGY ...
YAL003WMASTDFSKIETLKQLNASLADKSYIEGTAVSQADVTVFKAFQSAYPEFSRWFNHIASKADEFDSFPAASAAAAEEEEDDDVDLFGSDDEEADAEAEKLKAERIAAYNAKKAAKPAKPAAKSIVTLDVK ...
YAL005CMSKAVGIDLGTTYSCVAHFANDRVDIIANDQGNRTTPSFVAFTDTERLIGDAAKNQAAMNPSNTVFDAKRLIGRNFNDPEVQADMKHFPFKLIDVDGKPQIQVEFKGETKNFTPEQISSMVLGKMKET ...
YAL007CMIKSTIALPSFFIVLILALVNSVAASSSYAPVAISLPAFSKECLYYDMVTEDDSLAVGYQVLTGGNFEIDFDITAPDGSVITSEKQKKYSDFLLKSFGVGKYTFCFSNNYGTALKKVEITLEKEKTLT ...
YAL008WMTLAFNMQRLVFRNLNVGKRMFKNVPLWRFNVANKLGKPLTRSVGLGGAGIVAGGFYLMNRQPSKLIFNDSLGAAVKQQGPLEPTVGNSTAITEERRNKISSHKQMFLGSLFGVVLGVTVAKISILFM ...
YAL009WMEPESIGDVGNHAQDDSASIVSGPRRRSTSKTSSAKNIRNSSNISPASMIFRNLLILEDDLRRQAHEQKILKWQFTLFLASMAGVGAFTFYELYFTSDYVKGLHRVILQFTLSFISITVVLFHISGQY ...
YAL010CMLPYMDQVLRAFYQSTHWSTQNSYEDITATSRTLLDFRIPSAIHLQISNKSTPNTFNSLDFSTRSRINGSLSYLYSDAQQLEKFMRNSTDIPLQDATETYRQLQPNLNFSVSSANTLSSDNTTVDNDK ...
YAL011WMPAVLRTRSKESSIEQKPASRTRTRSRRGKRGRDDDDDDDDEESDDAYDEVGNDYDEYASRAKLATNRPFEIVAGLPASVELPNYNSSLTHPQSIKNSGVLYDSLVSSRRTWVQGEMFELYWRRPKKI ...
YAL012WMTLQESDKFATKAIHAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.