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Schema for rgdGene2Pep
  Database: rn4    Primary Table: rgdGene2Pep    Row Count: 13,115   Data last updated: 2010-10-18
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name RGD:1302933varchar(255) values Name of gene - same as in genePred
seq MQALLFLMALVLPSGAGAEEIVGGVES...longblob   Peptide sequence

Connected Tables and Joining Fields
        rn4.affyExonTissuesGsMedianDistRgdGene2.query (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsMedianDistRgdGene2.target (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsMedianRgdGene2.name (via rgdGene2Pep.name)
      rn4.affyExonTissuesGsRgdGene2.name (via rgdGene2Pep.name)
      rn4.ceBlastTab.query (via rgdGene2Pep.name)
      rn4.dmBlastTab.query (via rgdGene2Pep.name)
      rn4.drBlastTab.query (via rgdGene2Pep.name)
      rn4.gnfAtlas2RgdGene2Distance.query (via rgdGene2Pep.name)
      rn4.gnfAtlas2RgdGene2Distance.target (via rgdGene2Pep.name)
      rn4.hgBlastTab.query (via rgdGene2Pep.name)
      rn4.mmBlastTab.query (via rgdGene2Pep.name)
      rn4.rgdGene2.name (via rgdGene2Pep.name)
      rn4.rgdGene2BlastTab.query (via rgdGene2Pep.name)
      rn4.rgdGene2BlastTab.target (via rgdGene2Pep.name)
      rn4.rgdGene2Canonical.transcript (via rgdGene2Pep.name)
      rn4.rgdGene2Isoforms.transcript (via rgdGene2Pep.name)
      rn4.rgdGene2KeggPathway.rgdId (via rgdGene2Pep.name)
      rn4.rgdGene2ToDescription.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToDisplayId.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToEnsembl.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGenbank.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGenbankAll.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToGnfAtlas2.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToKeggEntrez.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToLocusLink.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToPDB.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToPfam.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToRAE230.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToRefSeq.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToSymbol.rgdId (via rgdGene2Pep.name)
      rn4.rgdGene2ToU34A.name (via rgdGene2Pep.name)
      rn4.rgdGene2ToUniProt.name (via rgdGene2Pep.name)
      rn4.rgdGene2Xref.rgdGeneId (via rgdGene2Pep.name)
      rn4.rgdGenePathway.geneId (via rgdGene2Pep.name)
      rn4.scBlastTab.query (via rgdGene2Pep.name)

Sample Rows
 
nameseq
RGD:1302933MQALLFLMALVLPSGAGAEEIVGGVESIPHSRPYMAHLKITTEKGYVTFCGGFLISRQFVLTAAHCNGREITVTLGAHDVSKRESTQQKLKVEKQIIHKNYNFFSNIHDIMLLKLEKQVELTPAVDVV ...
RGD:1302934MRYADPSANRDLLGNRTLLFIFICAFALVTLLQQILYSKSYIKRYFEFYKEPLEFNSTRCLELRQEILEVKVLSMVKQSELFERWKSLQICKWAMDASEASLFKSTLSRCCNAPNFLFTTQKNTPVET ...
RGD:1302935MSGPSSWRRAATVMLAAGWSHASPAGFRLLLLQRAQNQRFMPGAHVFPGGVLDAADSSPDWVSLFAPRHTPPRFGLGPEPPRQPSFPGLFHGDADGAALPDDVALRICAIRETFEEAGVLLLRPRDSA ...
RGD:1302936MCWLLLWGILHTCPTQASVLLAQQFPQQLTSPGYPEPYIKGQESHADIEAPEGFAVRLIFQDFDLEPSPGCEGDSVTISTRGTDATRLCGQQGSSLGSPPNQMEFVSSGRSLRLTFRAHSSKNKVTHL ...
RGD:1302937MSCRFQSSSMSYGGGFGAGSCQLGGGRNISTCSSRFVTGGSSGGYGGGMSCGFGGGAGGGYGGGFGGGFGGSCGGGFGGGFGDFGSVDGGLLSGNEKITMQNLNDRLASYLEKVRALEAANADLEVKI ...
RGD:1302938MFLFLFFLVAVLPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPQSCGGFLVAKDIVMTAAHCNGRNIKVTLGAHNIRKRENTQVISVVKAKPHENYDKHSRFNDIMLLKVERKAQLNGAVKTIA ...
RGD:1302939MAAGTLYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVSNEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQAT ...
RGD:1302940MIEEAIETAQRYNSQPILKRQKPIRPYICSTIDFQDERDFLAKTIFPQLNDFCSSRGTYFKAVDLRWSALKAHKSFTNNQFRQYSCLHSQHLKLCLDYVNRCFPFFICLLGQTYGDFLPDYTPFLLSK ...
RGD:1302941MLGTVNTTGMQGFNKSERCPRDTRMTQLLFPVLYTVVFFTGVLLNTLALWVFIHIPSNSTFIIYLKNTLVADLIMTLMLPFKILSDSRLAPWQLRGFVCTFSSVVFYETMYVGIMMLGLIAFDRFLKI ...
RGD:1302944MSLQWTAVATFLYAEVFAVLLLCIPFISPKRWQKIFKSRLVELVVTYGNTFFVVLIVILVLLVIDAVREIRKYDDVTEKVNLQNNPGAMEHFHMKLFRAQRNLYIAGFSLLLSFLLRRLVTLISQQAT ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.