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Schema for knownGeneMrna
  Database: hg38    Primary Table: knownGeneMrna    Row Count: 533,740   Data last updated: 2025-09-26
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type description
name ENST00000832824.1varchar(255) Name of gene
seq CGCAGAGACGGGTAGAACCTCAGTAAT...longblob mRNA sequence

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via knownGeneMrna.name)
      hg38.ccdsKgMap.geneId (via knownGeneMrna.name)
      hg38.ceBlastTab.query (via knownGeneMrna.name)
      hg38.dmBlastTab.query (via knownGeneMrna.name)
      hg38.drBlastTab.query (via knownGeneMrna.name)
      hg38.foldUtr3.name (via knownGeneMrna.name)
      hg38.foldUtr5.name (via knownGeneMrna.name)
      hg38.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg38.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg38.gnfU95Distance.query (via knownGeneMrna.name)
      hg38.gnfU95Distance.target (via knownGeneMrna.name)
      hg38.humanHprdP2P.query (via knownGeneMrna.name)
      hg38.humanHprdP2P.target (via knownGeneMrna.name)
      hg38.humanVidalP2P.query (via knownGeneMrna.name)
      hg38.humanVidalP2P.target (via knownGeneMrna.name)
      hg38.humanWankerP2P.query (via knownGeneMrna.name)
      hg38.humanWankerP2P.target (via knownGeneMrna.name)
      hg38.keggPathway.kgID (via knownGeneMrna.name)
      hg38.kgAlias.kgID (via knownGeneMrna.name)
      hg38.kgColor.kgID (via knownGeneMrna.name)
      hg38.kgProtAlias.kgID (via knownGeneMrna.name)
      hg38.kgSpAlias.kgID (via knownGeneMrna.name)
      hg38.kgTargetAli.qName (via knownGeneMrna.name)
      hg38.kgXref.kgID (via knownGeneMrna.name)
      hg38.knownAttrs.kgID (via knownGeneMrna.name)
      hg38.knownBlastTab.query (via knownGeneMrna.name)
      hg38.knownBlastTab.target (via knownGeneMrna.name)
      hg38.knownCanonical.transcript (via knownGeneMrna.name)
      hg38.knownCds.name (via knownGeneMrna.name)
      hg38.knownGene.name (via knownGeneMrna.name)
      hg38.knownGenePep.name (via knownGeneMrna.name)
      hg38.knownIsoforms.transcript (via knownGeneMrna.name)
      hg38.knownToEnsembl.name (via knownGeneMrna.name)
      hg38.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg38.knownToHprd.name (via knownGeneMrna.name)
      hg38.knownToKeggEntrez.name (via knownGeneMrna.name)
      hg38.knownToLocusLink.name (via knownGeneMrna.name)
      hg38.knownToLynx.name (via knownGeneMrna.name)
      hg38.knownToMrna.name (via knownGeneMrna.name)
      hg38.knownToMrnaSingle.name (via knownGeneMrna.name)
      hg38.knownToMupit.name (via knownGeneMrna.name)
      hg38.knownToNextProt.name (via knownGeneMrna.name)
      hg38.knownToPfam.name (via knownGeneMrna.name)
      hg38.knownToRefSeq.name (via knownGeneMrna.name)
      hg38.knownToSuper.gene (via knownGeneMrna.name)
      hg38.knownToTag.name (via knownGeneMrna.name)
      hg38.knownToU133.name (via knownGeneMrna.name)
      hg38.knownToU95.name (via knownGeneMrna.name)
      hg38.knownToVisiGene.name (via knownGeneMrna.name)
      hg38.knownToWikipedia.name (via knownGeneMrna.name)
      hg38.mmBlastTab.query (via knownGeneMrna.name)
      hg38.rnBlastTab.query (via knownGeneMrna.name)
      hg38.scBlastTab.query (via knownGeneMrna.name)
      hg38.ucscScop.ucscId (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
ENST00000832824.1CGCAGAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGG ...
ENST00000832825.1GAGACGGGTAGAACCTCAGTAATCCGAAAAGCCGGGATCGACCGCCCCTTGCTTGCAGCCGGGCACTACAGGACCCGCTTGCTCACGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCA ...
ENST00000832826.1CCTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAA ...
ENST00000832827.1CTGCTGGCAGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAA ...
ENST00000832828.1GACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTATAGGGAAACACCCGGAGCATATGCTGTTTGGTCTCAGTAGACTCCTAAATATGGGATTCCTGGGTTTAAAAGTAAAAAATAAATAT ...
ENST00000832829.1GAGAATGACTGCGCAAATTTGCCGGATTTCCTTTGCTGTTCCTGCATGTAGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTG ...
ENST00000832830.1AGTTTAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCC ...
ENST00000832837.1TAAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTG ...
ENST00000832836.1AAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGT ...
ENST00000832832.1AAACGAGATTGCCAGCACCGGGTGTCTGACTTCCAGCAACTGCTGGCCTGTGCCAGGGTGCAAGCTGAGCACTGGAGTGGAGTTTTCCTGTGGAGAGGAGCCATGCCTAGAGTGGGATGGGCCATTGT ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.