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Schema for knownGenePep
  Database: hg18    Primary Table: knownGenePep    Row Count: 53,036   Data last updated: 2009-03-03
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc009vjh.1varchar(255) values Name of gene - same as in genePred
seq MVTEFIFLGLSDSQELQTFLFMLFFVF...longblob   Peptide sequence

Connected Tables and Joining Fields
        hg18.bioCycPathway.kgID (via knownGenePep.name)
      hg18.ccdsKgMap.geneId (via knownGenePep.name)
      hg18.ceBlastTab.query (via knownGenePep.name)
      hg18.dmBlastTab.query (via knownGenePep.name)
      hg18.drBlastTab.query (via knownGenePep.name)
      hg18.foldUtr3.name (via knownGenePep.name)
      hg18.foldUtr5.name (via knownGenePep.name)
      hg18.gnfAtlas2Distance.query (via knownGenePep.name)
      hg18.gnfAtlas2Distance.target (via knownGenePep.name)
      hg18.gnfU95Distance.query (via knownGenePep.name)
      hg18.gnfU95Distance.target (via knownGenePep.name)
      hg18.humanHprdP2P.query (via knownGenePep.name)
      hg18.humanHprdP2P.target (via knownGenePep.name)
      hg18.humanVidalP2P.query (via knownGenePep.name)
      hg18.humanVidalP2P.target (via knownGenePep.name)
      hg18.humanWankerP2P.query (via knownGenePep.name)
      hg18.humanWankerP2P.target (via knownGenePep.name)
      hg18.keggPathway.kgID (via knownGenePep.name)
      hg18.kgAlias.kgID (via knownGenePep.name)
      hg18.kgColor.kgID (via knownGenePep.name)
      hg18.kgProtAlias.kgID (via knownGenePep.name)
      hg18.kgProtMap2.qName (via knownGenePep.name)
      hg18.kgSpAlias.kgID (via knownGenePep.name)
      hg18.kgTargetAli.qName (via knownGenePep.name)
      hg18.kgTxInfo.name (via knownGenePep.name)
      hg18.kgXref.kgID (via knownGenePep.name)
      hg18.knownBlastTab.query (via knownGenePep.name)
      hg18.knownBlastTab.target (via knownGenePep.name)
      hg18.knownCanonical.protein (via knownGenePep.name)
      hg18.knownCanonical.transcript (via knownGenePep.name)
      hg18.knownGene.name (via knownGenePep.name)
      hg18.knownGeneMrna.name (via knownGenePep.name)
      hg18.knownIsoforms.transcript (via knownGenePep.name)
      hg18.knownToAllenBrain.name (via knownGenePep.name)
      hg18.knownToEnsembl.name (via knownGenePep.name)
      hg18.knownToGnf1h.name (via knownGenePep.name)
      hg18.knownToGnfAtlas2.name (via knownGenePep.name)
      hg18.knownToHInv.name (via knownGenePep.name)
      hg18.knownToHprd.name (via knownGenePep.name)
      hg18.knownToKeggEntrez.name (via knownGenePep.name)
      hg18.knownToLocusLink.name (via knownGenePep.name)
      hg18.knownToMupit.name (via knownGenePep.name)
      hg18.knownToPfam.name (via knownGenePep.name)
      hg18.knownToRefSeq.name (via knownGenePep.name)
      hg18.knownToSuper.gene (via knownGenePep.name)
      hg18.knownToTreefam.name (via knownGenePep.name)
      hg18.knownToU133.name (via knownGenePep.name)
      hg18.knownToU133Plus2.name (via knownGenePep.name)
      hg18.knownToU95.name (via knownGenePep.name)
      hg18.knownToVisiGene.name (via knownGenePep.name)
      hg18.mmBlastTab.query (via knownGenePep.name)
      hg18.rnBlastTab.query (via knownGenePep.name)
      hg18.scBlastTab.query (via knownGenePep.name)
      hg18.ucscScop.ucscId (via knownGenePep.name)
      knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
uc009vjh.1MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTI ...
uc001aal.1MVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVILIAMGFDRYIAICKPLHYTTI ...
uc001aav.2MASGRWAPLGPAWASRRPPQAQIVPKSVSPGLAPASRRPLQAQVVLKSAWKWAWKSSKSASLGPAPSSRRPLQVQNFLESASPGPAPPASQWPLSAQPSSWLSAAFPGPAFDFWQPLQAQNLISSRPL ...
uc001aaw.1MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
uc001abd.1MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
uc009vjm.1MASGRWAPLGPAWASRRPLQAQIVPKSVSPGLAPASRRPLQAQVVLKSAWKWAWKSSKSASLGPAPSSRRPLQVQNFLESASPGPAPPASQWPLSAQPSSWLSAAFPGPAFDFWQPLQAQNLISSRPL ...
uc001abe.2MKAQNLLKLTCPGPAPASCQRLQAQPLPHGGFSRPTSSSWLGLQAQLLPHNSLFWPSSCPAHGGQCRPKTSSSQTLQAHLLLPGGINRPSFDLRTASAGPALASQGLFPGPALASWQLPQAKFLPACQ ...
uc001abv.1MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...
uc001abw.1MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...
uc001abx.1MPEHQSRCEFQRGSLEIGLRPAGDLLGKRLGRSPRISSDCFSEKRARSESPQEALLLPRELGPSMAPEDHYRRLVSALSEASTFEDPQRLYHLGLPSHDLLRVRQEVAAAALRGPSGLEAHLPSSTAG ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.