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Schema for knownGeneMrna
  Database: hg16    Primary Table: knownGeneMrna    Row Count: 42,026   Data last updated: 2004-03-27
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000099varchar(255) values Name of gene
seq cagtcacgggccagcctttcccttaag...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via knownGeneMrna.name)
      hg16.dmBlastTab.query (via knownGeneMrna.name)
      hg16.drBlastTab.query (via knownGeneMrna.name)
      hg16.dupSpMrna.mrnaID (via knownGeneMrna.name)
      hg16.foldUtr3.name (via knownGeneMrna.name)
      hg16.foldUtr5.name (via knownGeneMrna.name)
      hg16.gnfAtlas2Distance.query (via knownGeneMrna.name)
      hg16.gnfAtlas2Distance.target (via knownGeneMrna.name)
      hg16.gnfU95Distance.query (via knownGeneMrna.name)
      hg16.gnfU95Distance.target (via knownGeneMrna.name)
      hg16.hg17Kg.name (via knownGeneMrna.name)
      hg16.keggPathway.kgID (via knownGeneMrna.name)
      hg16.kgAlias.kgID (via knownGeneMrna.name)
      hg16.kgProtAlias.kgID (via knownGeneMrna.name)
      hg16.kgXref.kgID (via knownGeneMrna.name)
      hg16.knownBlastTab.query (via knownGeneMrna.name)
      hg16.knownBlastTab.target (via knownGeneMrna.name)
      hg16.knownCanonical.transcript (via knownGeneMrna.name)
      hg16.knownGene.name (via knownGeneMrna.name)
      hg16.knownGeneLink.name (via knownGeneMrna.name)
      hg16.knownGenePep.name (via knownGeneMrna.name)
      hg16.knownIsoforms.transcript (via knownGeneMrna.name)
      hg16.knownToEnsembl.name (via knownGeneMrna.name)
      hg16.knownToGnfAtlas2.name (via knownGeneMrna.name)
      hg16.knownToHInv.name (via knownGeneMrna.name)
      hg16.knownToLocusLink.name (via knownGeneMrna.name)
      hg16.knownToPfam.name (via knownGeneMrna.name)
      hg16.knownToRefSeq.name (via knownGeneMrna.name)
      hg16.knownToSuper.gene (via knownGeneMrna.name)
      hg16.knownToU133.name (via knownGeneMrna.name)
      hg16.knownToU95.name (via knownGeneMrna.name)
      hg16.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)

Sample Rows
 
nameseq
AB000099cagtcacgggccagcctttcccttaaggatgtctgagagctggtctcctcactcttttcttccgcctattaaactttccgcttcttaactcacccatgtgtgtccatgtcgttaatcatcttgacgag ...
AB000114gcacgagaagaatttaggaatttctgattcatttaaaggatttacaaattcatcaacccctgaaaactaaagcaaattgaacaggaaaaaaaaaaagaagatgggttttttaagtccaatatatgtta ...
AB000115gcacgaggaagccacagatctcttaagaactttctgtctccaaaccgtggctgctcgataaatcagacagaacagttaatcctcaatttaagcctgatctaacccctagaaacagatatagaacaatg ...
AB000220ggactgcgaaaggagcagggttgcggagctagggctccagcctgcggccgcgcattcttgcgtctggccagccgcgagctctaagggtcggccccgcccggtccgcccccgcggctccctgccaggct ...
AB000277tgcccaagacgggtctggagcctgacttccgggtgtccatgaccctggcggctgcttccggtccgccatgaaagggctatcaggcagccgcagccatcaccacggggtcacctgcgactcggcctgtg ...
AB000449ccgagttacgagtcggcgaaagcggcgggaagttcgtactgggcagaacgcgacgggtctgcggcttaggtgaaaatgcctcgtgtaaaagcagctcaagctggaagacagagctctgcaaagagaca ...
AB000459cacaatgacatgcagacctgcatattggagctggacggagaaactgggctaatgtgacagacagcaacaagagtaaggcagttgcttcgctattgagagaaagaaccatatgaagaaatttcggcaga ...
AB000460cacaatgacatgcagacctgcatattggagctggacggagaaactgggctaatgtgacagacagcaacaagagtaaggcagttgcttcgctattgagagaaagaaccatatgaagaaatttcggcaga ...
AB000461cacaatgacatgcagacctgcatattggagctggacggagaaactgggctaatgtgacagacagcaacaagagtaaggcagttgcttcgctattgagagaaagaaccatatgaagaaatttcggcaga ...
AB000462cagccgggtgacccaggccgaggccggcagaagacagcctgatgccttgaagacttcctcttgcacttttgttggagggtgctggtttgctaaaagcagagagtatttttctttttatttattttgtt ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.