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Schema for wgEncodeGencodePubMedVM39
  Database: mm39    Primary Table: wgEncodeGencodePubMedVM39    Row Count: 15,636,696   Data last updated: 2026-04-24
Format description: Gencode metadata table of PubMed identifier of published experimental data associated with Gencode Genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
transcriptId ENSMUST00000201297.2varchar(255) GENCODE transcript identifier
pubMedId 21267068int(11) PubMed identifier of supporting literature

Connected Tables and Joining Fields
        mm39.wgEncodeGencodeAttrsVM39.transcriptId (via wgEncodeGencodePubMedVM39.transcriptId)

Sample Rows
 
transcriptIdpubMedId
ENSMUST00000201297.221267068
ENSMUST00000201297.223954414
ENSMUST00000201297.230842662
ENSMUST00000201297.232865519
ENSMUST00000201297.233608268
ENSMUST00000201297.226929373
ENSMUST00000201297.227305347
ENSMUST00000194391.221267068
ENSMUST00000194391.223954414
ENSMUST00000194391.230842662

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.