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Schema for wgEncodeGencodePubMedV50
  Database: hg38    Primary Table: wgEncodeGencodePubMedV50    Row Count: 759,125   Data last updated: 2026-04-24
Format description: Gencode metadata table of PubMed identifier of published experimental data associated with Gencode Genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
transcriptId ENST00000636564.1varchar(255) GENCODE transcript identifier
pubMedId 15337775int(11) PubMed identifier of supporting literature

Connected Tables and Joining Fields
        hg38.wgEncodeGencodeAttrsV50.transcriptId (via wgEncodeGencodePubMedV50.transcriptId)

Sample Rows
 
transcriptIdpubMedId
ENST00000636564.115337775
ENST00000636564.118840647
ENST00000636564.119843585
ENST00000636203.115337775
ENST00000636203.118840647
ENST00000636203.119843585
ENST00000491547.115337775
ENST00000491547.118840647
ENST00000491547.119843585
ENST00000376030.715337775

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.