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Schema for flyBasePep
  Database: dm2    Primary Table: flyBasePep    Row Count: 19,376   Data last updated: 2007-04-06
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name CG30188-RAvarchar(255) values Name of gene
seq MSQVNTTWPFKARRNGSFDARGRPLNL...longblob   mRNA sequence

Connected Tables and Joining Fields
        dm2.arbExpDistance.query (via flyBasePep.name)
      dm2.arbExpDistance.target (via flyBasePep.name)
      dm2.ceBlastTab.query (via flyBasePep.name)
      dm2.drBlastTab.query (via flyBasePep.name)
      dm2.flyBase2004Xref.name (via flyBasePep.name)
      dm2.flyBaseBlastTab.query (via flyBasePep.name)
      dm2.flyBaseBlastTab.target (via flyBasePep.name)
      dm2.flyBaseCanonical.transcript (via flyBasePep.name)
      dm2.flyBaseGene.name (via flyBasePep.name)
      dm2.flyBaseIsoforms.transcript (via flyBasePep.name)
      dm2.flyBaseNoncoding.name (via flyBasePep.name)
      dm2.flyBaseToCG.name (via flyBasePep.name)
      dm2.flyBaseToDescription.name (via flyBasePep.name)
      dm2.flyBaseToPfam.name (via flyBasePep.name)
      dm2.flyBaseToRefSeq.name (via flyBasePep.name)
      dm2.flyBaseToUniProt.name (via flyBasePep.name)
      dm2.flyP2P.query (via flyBasePep.name)
      dm2.flyP2P.target (via flyBasePep.name)
      dm2.hgBlastTab.query (via flyBasePep.name)
      dm2.mmBlastTab.query (via flyBasePep.name)
      dm2.rnBlastTab.query (via flyBasePep.name)
      dm2.scBlastTab.query (via flyBasePep.name)

Sample Rows
 
nameseq
CG30188-RAMSQVNTTWPFKARRNGSFDARGRPLNLGIPWADESVFNKKAHFHHDTDPPALRIKNIQTSDAGLYKCRVDFHKSPTRNWRINVTVLVPPTALTILDHHGAEIRDQTAGPYLEGDSIDLTCLSSGGVPP ...
CG12477-RAMSTVASNDQHVDTGVLPVPSTNSPSSQIEQKGNEAIVPNYKAATAGEQGEAQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFARSQDKKCGICFETIMEKEGGDKRFGILPSCNHVFC ...
CG17723-RDMAKYSGKKCRLLSMMWLTAFFFFVEIIVGYVTNSMALVADSFHMLGDIAALVISFLSVKMSPKKWSKNTFGWARAEVLGALVNAVFLVALCFSITIEACKRFIEEEPIHEPELLVIVGALGLLVNVIG ...
CG5273-RAMMASSGGACSPFAYVAWALFALLLTHGGDNVVDARRNQGNQRKTSSSSSSSNYGHVTQPSYNTNGHAAGNSHADVAKLSYPNYNSQPNRPMAAGSSGSPGSAPQPGWNVPQGPPPAYSASNPAGGARP ...
CG4356-RBMEPVMSLALAAHGPPSILEPLFKTVTTSTTTTTTTTTSTTTTTASPAGYSPGYPGTTLLTALFENLTSTAASGLYDPYSGMYGNQTNGTIGFETKGPRYSLASMVVMGFVAAILSTVTVAGNVMVMIS ...
CG8789-RCMQPFSDSLSKSRDDLVTAASRQQQQLHGRRRHHGSSPNLSLDQTDNLRRSMACLQDEFGHLGIAATDLPFKSSDLDSPPRLQHHNNYAEITDSSAENTCQQRWPPHVGGAGAAFGHPDKPIGWMYGLL ...
CG32490-RKMEEEREKMRQDIRDKYNIKKKEEIVEAAPQEEPNPLMRKKKTPEELAAEAEQEELDDFTKLKNQIETQVNELKTQIEGKCVMQ
CG32849-RAMRKSTRLLTHSLFGPVFKILFHNKTVCGGCNRKMPSLVNTEIEAAVKGFLIDQEKMTEVVERMTKEIKMGLAKDTHARAVIKCFVSHVQDLPTGKERGKYLALDLGGSNFRVLLVNLISNSDVETMSK ...
CG4767-RAMNCLEKKSPEANPECKGRTIELNPGSACPAPLICPLPTEPPSHRLKKPPQPALVALTPHPDEAAQQHLVQNIMGSAQEHQKLQADLQAGVDQQQMQLADMRAEQYKQSNKPLRMEEVQFARSMDPEAD ...
CG16890-RAMSGSQLFPVNLNNLSAKERHNYILSNYVLNLPNETESRRHKRDIDVIRENHRFLWEDDELDSDTLSWEQRLALRYYRKLFKEYCIADLSRYKENKIALRWRTEQEVVTGTGQFQCGSRHCGERDNLRS ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.