Schema for wgEncodeGencodeTranscriptSupportVM39

Database: mm39 Primary Table: wgEncodeGencodeTranscriptSupportVM39 Row Count: 27,840 Data last updated: 2026-04-24
Format description: GENCODE transcript support from other datasets
On download server: MariaDB table dump directory

field	example	SQL type	info	description
`transcriptId`	ENSMUST00000043725.9	`varchar(255)`	values	GENCODE transcript identifier
`seqId`	CCDS35689.1	`varchar(255)`	values	Identifier of sequence supporting transcript
`seqSrc`	CCDS	`varchar(255)`	values	Source of supporting sequence

Connected Tables and Joining Fields


	mm39.wgEncodeGencodeAttrsVM39.transcriptId (via wgEncodeGencodeTranscriptSupportVM39.transcriptId)

Sample Rows

transcriptId	seqId	seqSrc
ENSMUST00000043725.9	CCDS35689.1	CCDS
ENSMUST00000179777.3	Q5SVV3.2	Uniprot/SPTREMBL
ENSMUST00000072079.9	NM_021511	RefSeq_dna
ENSMUST00000072079.9	CCDS14811.1	CCDS
ENSMUST00000168641.2	Q8NDH2.2	Uniprot/SWISSPROT
ENSMUST00000170511.3	B2RQY6	Uniprot/SPTREMBL
ENSMUST00000068875.5	NM_001081197	RefSeq_dna
ENSMUST00000068875.5	CCDS35738.1	CCDS
ENSMUST00000165691.3	P51881.3	Uniprot/SWISSPROT
ENSMUST00000110797.2	Q3TTL0.1	Uniprot/SWISSPROT

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.