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Schema for wgEncodeGencodePdbV50lift37
  Database: hg19    Primary Table: wgEncodeGencodePdbV50lift37    Row Count: 357,387   Data last updated: 2026-04-24
Format description: GENCODE transcript to Protein Data Bank (PDB) protein structure mapping
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENST00000327044.7_9varchar(255) values GENCODE transcript identifier
pdbId 8FKVvarchar(255) values Protein Data Bank (PDB) identifier

Connected Tables and Joining Fields
        hg19.wgEncodeGencodeAttrsV50lift37.transcriptId (via wgEncodeGencodePdbV50lift37.transcriptId)

Sample Rows
 
transcriptIdpdbId
ENST00000327044.7_98FKV
ENST00000327044.7_98FKW
ENST00000327044.7_98FKX
ENST00000327044.7_98FKY
ENST00000338591.8_46HRL
ENST00000649529.1_51Z2M
ENST00000649529.1_52HJ8
ENST00000649529.1_53PHX
ENST00000649529.1_53PSE
ENST00000649529.1_53R66

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.