Skip to main content
Schema for sgdPep
  Database: sacCer3    Primary Table: sgdPep    Row Count: 6,692   Data last updated: 2011-08-30
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name Q0010varchar(255) values Name of gene - same as in genePred
seq MYYIMFLYNMLLIIILIFYSIVGVPII...longblob   Peptide sequence

Connected Tables and Joining Fields
        sacCer3.ceBlastTab.query (via sgdPep.name)
      sacCer3.choExpDistance.query (via sgdPep.name)
      sacCer3.choExpDistance.target (via sgdPep.name)
      sacCer3.dmBlastTab.query (via sgdPep.name)
      sacCer3.drBlastTab.query (via sgdPep.name)
      sacCer3.esRegGeneToModule.gene (via sgdPep.name)
      sacCer3.esRegGeneToMotif.gene (via sgdPep.name)
      sacCer3.esRegUpstreamRegion.name (via sgdPep.name)
      sacCer3.hgBlastTab.query (via sgdPep.name)
      sacCer3.mmBlastTab.query (via sgdPep.name)
      sacCer3.rnBlastTab.query (via sgdPep.name)
      sacCer3.sgdBlastTab.query (via sgdPep.name)
      sacCer3.sgdBlastTab.target (via sgdPep.name)
      sacCer3.sgdCanonical.transcript (via sgdPep.name)
      sacCer3.sgdDescription.name (via sgdPep.name)
      sacCer3.sgdGene.name (via sgdPep.name)
      sacCer3.sgdIsoforms.transcript (via sgdPep.name)
      sacCer3.sgdToName.name (via sgdPep.name)
      sacCer3.sgdToSwissProt.name (via sgdPep.name)

Sample Rows
 
nameseq
Q0010MYYIMFLYNMLLIIILIFYSIVGVPIIIFNNNYYWDPDIFLFIIYYFIKFIIIFNLYLYYMINYIVYTPSGSPPGRGTYILLYNMLYSYNMFIDYVMKFITCVTYMYLMFWLLSPTPSPYYVSEVPVS
Q0017MCATYMFNITVIITHPTPTLRTRGPGFVRNRDLYIYKYKSNLINNLNNMTYIL
Q0032MLMMYMLFIMMKTYPMLSYHMMSYHIMLYTIMWYMKYSTYMRLWLLYKSYFIFIFIWTNNNYNNNYWYVTMLMNTYLYYNMNIHFLTINKKFLYSL
Q0045MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWT ...
Q0050MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTSAYISLMRTALVLWIINRYLKHMTNSVGANFTGTMACHKTPMISVGGVKCYMVRLTNFLQVFIRITIS ...
Q0055MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFCAPFRLIYHCIEVLIDKHISVYSINENFTVSFWFWLLVVTYMVFRYVNHMAYPVGANSTG ...
Q0060MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNQKRYESNNNNNQVMENKEYNLKLNYDKLGPYLAGLIEGDGTITVQNS ...
Q0065MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWT ...
Q0070MVQRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWT ...
Q0075MLMLLMMILTNNKVFMETLYYYLMFNFQLMSPFGVPVPGPAPETKDIKNLYESIMNNYINILNKYTININKDNINKLKFLDNYTEEEKGYYLSGLFEGDGNIYTRCFSITFSLEDVLLANYLCTYFKI ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.