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Schema for sgdPep
  Database: sacCer2    Primary Table: sgdPep    Row Count: 6,245   Data last updated: 2009-02-24
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name YAL068W-Avarchar(255) values Name of gene - same as in genePred
seq MHGTCLSGLYPVPFTHNAHHYPHFDIY...longblob   Peptide sequence

Connected Tables and Joining Fields
        sacCer2.ceBlastTab.query (via sgdPep.name)
      sacCer2.choExpDistance.query (via sgdPep.name)
      sacCer2.choExpDistance.target (via sgdPep.name)
      sacCer2.dmBlastTab.query (via sgdPep.name)
      sacCer2.drBlastTab.query (via sgdPep.name)
      sacCer2.esRegGeneToModule.gene (via sgdPep.name)
      sacCer2.esRegGeneToMotif.gene (via sgdPep.name)
      sacCer2.esRegUpstreamRegion.name (via sgdPep.name)
      sacCer2.hgBlastTab.query (via sgdPep.name)
      sacCer2.mmBlastTab.query (via sgdPep.name)
      sacCer2.rnBlastTab.query (via sgdPep.name)
      sacCer2.sgdAbundance.name (via sgdPep.name)
      sacCer2.sgdBlastTab.query (via sgdPep.name)
      sacCer2.sgdBlastTab.target (via sgdPep.name)
      sacCer2.sgdCanonical.transcript (via sgdPep.name)
      sacCer2.sgdDescription.name (via sgdPep.name)
      sacCer2.sgdGene.name (via sgdPep.name)
      sacCer2.sgdIsoforms.transcript (via sgdPep.name)
      sacCer2.sgdLocalization.name (via sgdPep.name)
      sacCer2.sgdToName.name (via sgdPep.name)
      sacCer2.sgdToPfam.name (via sgdPep.name)
      sacCer2.sgdToSwissProt.name (via sgdPep.name)

Sample Rows
 
nameseq
YAL068W-AMHGTCLSGLYPVPFTHNAHHYPHFDIYISFGGPKYCITALNTYVIPLLHHILTTPFIYTYVNITEKSPQKSPKHKNILLFNNNT
YAL064WMRYTATFRPLQRFVMNPFASLEGQDNISSVFFLHMQQFESQVKDRFRFPIFRLERKTFGNSCYQVETLKVKCRPRHAKSCNLLTLLFKSRTQSVLVPNFGFLILNSEP
YAL058WMKFSAYLWWLFLNLALVKGTSLLSNVTLAEDSFWEHFQAYTNTKHLNQEWITSEAVNNEGSKIYGAQWRLSQGRLQGSAWDKGIAVRTGNAAAMIGHLLETPINVSETDTLVVQYEIKLDNSLTCGGA ...
YAL055WMPPPSRSRINKTRTLGIVGTAIAVLVTSYYIYQKVTSAKEDNGARPPEGDSVKENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCV ...
YAL051WMVENSTQKAPHAGNDDNSSTKPYSEAFFLGFNNPTPGLEAEHSSTSPAPENSETHNRKRNRILFVCQACWKSKTKCDREKPECGRCVKHGLKCVYDVSKQPAPRIPSKDAIISRLEKDMFYWKDKAMK ...
YAL031W-AMKDMNSIRYVFFFFSRDIKSCFYKVRSYLNLLLILEAILCPVDSLISIPNGIMVVSEPDSPFSHSNPSRRLFRKVNPSSCLSVLYLDLCCSGLIIAEAGIGG
YAL017WMPYIGASNLSEHSFVNLKEKHAITHKGTSSSVASLQTPPSPDQENHIDNELENYDTSLSDVSTPNKKEGDEFQQSLRDTFASFRKTKPPPPLDFEQPRLPSTASSSVDSTVSSPLTDEDIKELEFLPN ...
YAL013WMSQQTPQESEQTTAKEQDLDQESVLSNIDFNTDLNHNLNLSEYCISSDAGTEKMDSDEEKSLANLPELKYAPKLSSLVKQETLTESLKRPHEDEKEAIDEAKKMKVPGENEDESKEEEKSQELEEAID ...
YAL009WMEPESIGDVGNHAQDDSASIVSGPRRRSTSKTSSAKNIRNSSNISPASMIFRNLLILEDDLRRQAHEQKILKWQFTLFLASMAGVGAFTFYELYFTSDYVKGLHRVILQFTLSFISITVVLFHISGQY ...
YAR033WMQTPPESTDVKLDTLNEPSAHLIEKNVALPKDIFRSYLSYWIYEIARYTPVMILSLVIGVLVLLIIFFNDNEACVFNSAIFAFTSLVGLLIILSDGNPKLVSRRNFRTELLVDVITRKPAVEGKEWRI ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.