Skip to main content
Schema for knownGeneMrna
  Database: rn3    Primary Table: knownGeneMrna    Row Count: 7,528   Data last updated: 2004-03-24
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000098varchar(255) values Name of gene
seq cgcccgggcaggtgtaccatggcggtc...longblob   mRNA sequence

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownGeneMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneMrna.name)
      knownGeneV39.knownCds.name (via knownGeneMrna.name)
      knownGeneV39.knownGene.name (via knownGeneMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneMrna.name)
      rn3.dmBlastTab.query (via knownGeneMrna.name)
      rn3.drBlastTab.query (via knownGeneMrna.name)
      rn3.dupSpMrna.mrnaID (via knownGeneMrna.name)
      rn3.gnfAtlas2Distance.query (via knownGeneMrna.name)
      rn3.gnfAtlas2Distance.target (via knownGeneMrna.name)
      rn3.hgBlastTab.query (via knownGeneMrna.name)
      rn3.keggPathway.kgID (via knownGeneMrna.name)
      rn3.kgAlias.kgID (via knownGeneMrna.name)
      rn3.kgProtAlias.kgID (via knownGeneMrna.name)
      rn3.kgSpAlias.kgID (via knownGeneMrna.name)
      rn3.kgXref.kgID (via knownGeneMrna.name)
      rn3.knownBlastTab.query (via knownGeneMrna.name)
      rn3.knownBlastTab.target (via knownGeneMrna.name)
      rn3.knownCanonical.transcript (via knownGeneMrna.name)
      rn3.knownGene.name (via knownGeneMrna.name)
      rn3.knownGeneLink.name (via knownGeneMrna.name)
      rn3.knownGenePep.name (via knownGeneMrna.name)
      rn3.knownIsoforms.transcript (via knownGeneMrna.name)
      rn3.knownToEnsembl.name (via knownGeneMrna.name)
      rn3.knownToGnfAtlas2.name (via knownGeneMrna.name)
      rn3.knownToLocusLink.name (via knownGeneMrna.name)
      rn3.knownToPfam.name (via knownGeneMrna.name)
      rn3.knownToRefSeq.name (via knownGeneMrna.name)
      rn3.knownToSuper.gene (via knownGeneMrna.name)
      rn3.scBlastTab.query (via knownGeneMrna.name)

Sample Rows
 
nameseq
AB000098cgcccgggcaggtgtaccatggcggtctctctcctgctgcggggaggacgaatccgggcgctgaaggctgcccttctcgaggcaaaggtgttccgaggagaactggcttctacagtgcccctgtctac ...
AB000107tataactccagtaagcagatctccagagacagaactcatcctgatttggaagtcttcagcaatggagctgccattgagtcaacattccttctgcaaactcctgctcctggtggtatcaagcttgctgt ...
AB000113ctcttcaattccaactagaatgctgtggcaggcacttcgaagatttggtcaaaagctggtgcggagacgtttgctggagctgggcatgggtgaaacccgccttgccagatgcctgagcactctcgact ...
AB000199gcgagcggaaggaaggaagcctgtgtgcatctagctggtccaccagtccaggacacaacatctcccagtggccagtttgggcgccctgggacttcctacagctggccatggcagactctgcacaggtg ...
AB000215tgaggtgctgagtccgagggaggctccggatgccagagccgcggctgctgcaaccctcgccgctgtgagagaagcctctgggaagccccggtcgctaggagctgggaggcgccgcgtgcgctgccccg ...
AB000216tgaagtttgtggagcgctttctcaccggctggtccgggacgatagccggcgcctcgctcttcggtgaccgccccattctctcgggattccttctctgtggtgacggacgctctagacgctcggtaagg ...
AB000280accgggtccttagggaaccagccatggagggcgagcgggcgccgctgttaggttcgcggcgtgcggcggcagcagctggggtgtttgcggggcgtcgtgcggcgtgcggggcggtactgttggccgaa ...
AB000362cccgactcagcggctgccatggcatcagatgaaggcaagcttttcgtgggaggtctcagcttcgacaccaatgagcaggcgctggagcaggtcttctccaagtatgggcagatctcggaagtggtggt ...
AB000489atacgattctgaaggttccagaatcgatagtgaattcgtggaaagccgctcagtaattctcgtattatttaaagaaccactacactacaggatggcatctaccctggccccgattactagtactctag ...
AB000491gccgaaagagggaagatggcgcttgatgggccagagcagatggaactggaagaggggaaggcaggcagtggactccgtcaatattatctgtccaagattgaagaactccagttgattgtgaatgacaa ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.