Skip to main content
Schema for knownGenePep
  Database: mm7    Primary Table: knownGenePep    Row Count: 30,155   Data last updated: 2005-11-13
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB001539varchar(255) values Name of gene - same as in genePred
seq MLRMHNLHGTRPSPSEGSDDDEEDEDE...longblob   Peptide sequence

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)
      mm7.affyGnfU74ADistance.query (via knownGenePep.name)
      mm7.affyGnfU74ADistance.target (via knownGenePep.name)
      mm7.affyGnfU74BDistance.query (via knownGenePep.name)
      mm7.affyGnfU74BDistance.target (via knownGenePep.name)
      mm7.affyGnfU74CDistance.query (via knownGenePep.name)
      mm7.affyGnfU74CDistance.target (via knownGenePep.name)
      mm7.dmBlastTab.query (via knownGenePep.name)
      mm7.drBlastTab.query (via knownGenePep.name)
      mm7.dupSpMrna.mrnaID (via knownGenePep.name)
      mm7.foldUtr3.name (via knownGenePep.name)
      mm7.foldUtr5.name (via knownGenePep.name)
      mm7.gnfAtlas2Distance.query (via knownGenePep.name)
      mm7.gnfAtlas2Distance.target (via knownGenePep.name)
      mm7.hgBlastTab.query (via knownGenePep.name)
      mm7.keggPathway.kgID (via knownGenePep.name)
      mm7.kgAlias.kgID (via knownGenePep.name)
      mm7.kgProtAlias.kgID (via knownGenePep.name)
      mm7.kgSpAlias.kgID (via knownGenePep.name)
      mm7.kgXref.kgID (via knownGenePep.name)
      mm7.knownBlastTab.query (via knownGenePep.name)
      mm7.knownBlastTab.target (via knownGenePep.name)
      mm7.knownCanonical.transcript (via knownGenePep.name)
      mm7.knownGene.name (via knownGenePep.name)
      mm7.knownGeneLink.name (via knownGenePep.name)
      mm7.knownGeneMrna.name (via knownGenePep.name)
      mm7.knownIsoforms.transcript (via knownGenePep.name)
      mm7.knownToAllenBrain.name (via knownGenePep.name)
      mm7.knownToEnsembl.name (via knownGenePep.name)
      mm7.knownToGnfAtlas2.name (via knownGenePep.name)
      mm7.knownToKeggEntrez.name (via knownGenePep.name)
      mm7.knownToLocusLink.name (via knownGenePep.name)
      mm7.knownToPfam.name (via knownGenePep.name)
      mm7.knownToRefSeq.name (via knownGenePep.name)
      mm7.knownToVisiGene.name (via knownGenePep.name)
      mm7.rnBlastTab.query (via knownGenePep.name)
      mm7.scBlastTab.query (via knownGenePep.name)

Sample Rows
 
nameseq
AB001539MLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQLELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLT ...
AB001926MGGPPRHGVLDREERACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSTGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFT ...
AB003147MYRRSYVFQARQERYERAQPAGPAAQPGGTAPGLAALQALGERVAVQVQRARALQQRHAGLRRQLDAFQRLGEQPGPEDALARHVEANLQRARDLTAEHARLERQEAEAQRALDEFRSKYENECECQL ...
AB003503MAAAEAAEAEAQRKHLSLAFSSQLNIHAKPFVPSVSAAEFVPSFLPGSPQPPAPTASSCDETCIGGAGEPEGKRMEWGAPVEPSKDGPLVSWEGSSSVVTMELSEPVVENGEVEMALEESWELKEVSE ...
AB004048MAAVAAASAELLIIGWYIFRVLLQVSMYPGFGWERAPETRPGTP
AB005654MLGLPSTLFTPRSMESIEIDQKLQEIMKQTGYLTIGGQRYQAEINDLENLGEMGSGTCGQVWKMRFRKTGHIIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMELMGT ...
AB005662MMEIQMDEGGGVVVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEH ...
AB005909SQTSSPTPGWWNPGGTNNDVFYPTEQTTAEQTTIPDYTPI
AB006034MTQAVKLASRVFHRIHLPLQLDASLGSRGSESVLRSLSDIPGPSTLSFLAELFCKGGLSRLHELQVHGAARYGPIWSGSFGTLRTVYVADPTLVEQLLRQESHCPERCSFSSWAEHRRRHQRACGLLT ...
AB006329MVNCTIKSEEKKEPCHEAPQGAAPAVETQPGDPAPASQDAATAKAPPQDCASPESSGSPEPKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERFLGRSNVEAKDVKGTQESLAEKELQLL ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.