Schema for wgEncodeGencodeTranscriptSupportVM38

Database: mm39 Primary Table: wgEncodeGencodeTranscriptSupportVM38 Row Count: 29,501 Data last updated: 2025-09-09
Format description: GENCODE transcript support from other datasets
On download server: MariaDB table dump directory

field	example	SQL type	info	description
`transcriptId`	ENSMUST00000027542.13	`varchar(255)`	values	GENCODE transcript identifier
`seqId`	AY267034	`varchar(255)`	values	Identifier of sequence supporting transcript
`seqSrc`	EMBL	`varchar(255)`	values	Source of supporting sequence

Connected Tables and Joining Fields


	mm39.wgEncodeGencodeAttrsVM38.transcriptId (via wgEncodeGencodeTranscriptSupportVM38.transcriptId)

Sample Rows

transcriptId	seqId	seqSrc
ENSMUST00000027542.13	AY267034	EMBL
ENSMUST00000027542.13	CCDS15221.1	CCDS
ENSMUST00000172005.8	NM_172853	RefSeq_dna
ENSMUST00000172005.8	CCDS15221.1	CCDS
ENSMUST00000039725.12	NM_012012	RefSeq_dna
ENSMUST00000039725.12	CCDS15551.1	CCDS
ENSMUST00000126008.8	NM_026430	RefSeq_dna
ENSMUST00000126008.8	CCDS35551.1	CCDS
ENSMUST00000094626.5	NM_001081386	RefSeq_dna
ENSMUST00000094626.5	CCDS35687.1	CCDS

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.