Schema for wgEncodeGencodePubMedVM38

Database: mm39 Primary Table: wgEncodeGencodePubMedVM38 Row Count: 5,764,623 Data last updated: 2025-09-09
Format description: Gencode metadata table of PubMed identifier of published experimental data associated with Gencode Genes
On download server: MariaDB table dump directory

field	example	SQL type	description
`transcriptId`	ENSMUST00000137092.8	`varchar(255)`	GENCODE transcript identifier
`pubMedId`	12466851	`int(11)`	PubMed identifier of supporting literature

Connected Tables and Joining Fields


	mm39.wgEncodeGencodeAttrsVM38.transcriptId (via wgEncodeGencodePubMedVM38.transcriptId)

Sample Rows

transcriptId	pubMedId
ENSMUST00000137092.8	12466851
ENSMUST00000137092.8	12948444
ENSMUST00000137092.8	15273735
ENSMUST00000137092.8	16141072
ENSMUST00000137092.8	21267068
ENSMUST00000137092.8	19809474
ENSMUST00000137092.8	20711475
ENSMUST00000137092.8	21677750
ENSMUST00000137092.8	22036570
ENSMUST00000137092.8	20847152

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.