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Schema for knownGenePep
  Database: mm10    Primary Table: knownGenePep    Row Count: 67,238   Data last updated: 2019-09-20
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENSMUST00000070533.4varchar(255) values Name of gene - same as in genePred
seq MAAKSDGRLKMKKSSDVAFTPLQNSDN...longblob   Peptide sequence

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)
      mm10.bioCycPathway.kgID (via knownGenePep.name)
      mm10.ccdsKgMap.geneId (via knownGenePep.name)
      mm10.ceBlastTab.query (via knownGenePep.name)
      mm10.dmBlastTab.query (via knownGenePep.name)
      mm10.drBlastTab.query (via knownGenePep.name)
      mm10.foldUtr3.name (via knownGenePep.name)
      mm10.foldUtr5.name (via knownGenePep.name)
      mm10.hgBlastTab.query (via knownGenePep.name)
      mm10.keggPathway.kgID (via knownGenePep.name)
      mm10.kgAlias.kgID (via knownGenePep.name)
      mm10.kgColor.kgID (via knownGenePep.name)
      mm10.kgProtAlias.kgID (via knownGenePep.name)
      mm10.kgProtMap2.qName (via knownGenePep.name)
      mm10.kgSpAlias.kgID (via knownGenePep.name)
      mm10.kgTargetAli.qName (via knownGenePep.name)
      mm10.kgTxInfo.name (via knownGenePep.name)
      mm10.kgXref.kgID (via knownGenePep.name)
      mm10.knownAttrs.kgID (via knownGenePep.name)
      mm10.knownBlastTab.query (via knownGenePep.name)
      mm10.knownBlastTab.target (via knownGenePep.name)
      mm10.knownCanonical.transcript (via knownGenePep.name)
      mm10.knownCds.name (via knownGenePep.name)
      mm10.knownGene.name (via knownGenePep.name)
      mm10.knownGeneMrna.name (via knownGenePep.name)
      mm10.knownIsoforms.transcript (via knownGenePep.name)
      mm10.knownToEnsembl.name (via knownGenePep.name)
      mm10.knownToKeggEntrez.name (via knownGenePep.name)
      mm10.knownToLocusLink.name (via knownGenePep.name)
      mm10.knownToLynx.name (via knownGenePep.name)
      mm10.knownToMrna.name (via knownGenePep.name)
      mm10.knownToMrnaSingle.name (via knownGenePep.name)
      mm10.knownToPfam.name (via knownGenePep.name)
      mm10.knownToRefSeq.name (via knownGenePep.name)
      mm10.knownToSuper.gene (via knownGenePep.name)
      mm10.knownToTag.name (via knownGenePep.name)
      mm10.knownToVisiGene.name (via knownGenePep.name)
      mm10.knownToWikipedia.name (via knownGenePep.name)
      mm10.rnBlastTab.query (via knownGenePep.name)
      mm10.scBlastTab.query (via knownGenePep.name)
      mm10.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
ENSMUST00000070533.4MAAKSDGRLKMKKSSDVAFTPLQNSDNSGSVQGLAPGLPSGSGAEDTEAAGGGCCPDGGGCSRCCCCCAGSGGSAGSGGSGGGGRGSGAGSAALCLRLGREQRRYSLWDCLWILAAVAVYFADVGTDI ...
ENSMUST00000208660.1MLEKLQVSPKMSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDK ...
ENSMUST00000194992.6MLEKLQVSPKMSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDK ...
ENSMUST00000027032.5MSDTPSTSFSMIHLTSEGQVPSPRHSNITHPVVAKRISFYKSGDPQFGGVRVVVNPRSFKTFDALLDSLSRKVPLPFGVRNISTPRGRHSITRLEELEDGKSYVCSHNKKVLPVDLDKARRRPRPWLS ...
ENSMUST00000027035.9MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...
ENSMUST00000195555.1MQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGGRVAMDGLGLPFPEPGYPAGPPLMSPHMGPHYRDCQGLGAPALDGYPLPTPDTSPLDGVEQDPAFFAAPLPGDCPAAGTYTYAPV ...
ENSMUST00000192650.5MSPHGYNEQHLQTSEFQPSYFPKRSWRQRPAPASFPQGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGGRVAMDGLGLPFPEPGYPAGPP ...
ENSMUST00000116652.7MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...
ENSMUST00000191647.1MSPHGYNEQHLQTSEFQPSYFPKRSWRQRPAPASFPQGKSWKALTLAEKRPFVEEAERLRVQHMQDHPNYKYRPRRRKQVKRMKRVEGGFLHALVEPQAGALGPEGG
ENSMUST00000191939.1MSSPDAGYASDDQSQPRSAQPAVMAGLGPCPWAESLSPLGDVKVKGEVVASSGAPAGTSGRAKAESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAERLRVQH ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.