Skip to main content
Schema for wgEncodeGencodePubMedV48lift37
  Database: hg19    Primary Table: wgEncodeGencodePubMedV48lift37    Row Count: 323,452   Data last updated: 2025-02-05
Format description: Gencode metadata table of PubMed identifier of published experimental data associated with Gencode Genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENST00000450305.2_3varchar(255) values GENCODE transcript identifier
pubMedId 19476624int(11) range PubMed identifier of supporting literature

Connected Tables and Joining Fields
        hg19.wgEncodeGencodeAttrsV48lift37.transcriptId (via wgEncodeGencodePubMedV48lift37.transcriptId)

Sample Rows
 
transcriptIdpubMedId
ENST00000450305.2_319476624
ENST00000831201.1_118159949
ENST00000831140.1_218159949
ENST00000831141.1_118159949
ENST00000831158.1_118159949
ENST00000831161.1_118159949
ENST00000831165.1_118159949
ENST00000831154.1_118159949
ENST00000831146.1_118159949
ENST00000831145.1_118159949

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.