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Schema for knownGeneTxMrna
  Database: hg19    Primary Table: knownGeneTxMrna    Row Count: 82,960   Data last updated: 2013-06-14
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name uc001aaa.3varchar(255) values Name of gene - same as in genePred
seq cttgccgtcagccttttctttgacctc...longblob   Peptide sequence

Connected Tables and Joining Fields
        hg19.bioCycPathway.kgID (via knownGeneTxMrna.name)
      hg19.ceBlastTab.query (via knownGeneTxMrna.name)
      hg19.dmBlastTab.query (via knownGeneTxMrna.name)
      hg19.drBlastTab.query (via knownGeneTxMrna.name)
      hg19.foldUtr3.name (via knownGeneTxMrna.name)
      hg19.foldUtr5.name (via knownGeneTxMrna.name)
      hg19.gnfAtlas2Distance.query (via knownGeneTxMrna.name)
      hg19.gnfAtlas2Distance.target (via knownGeneTxMrna.name)
      hg19.gnfU95Distance.query (via knownGeneTxMrna.name)
      hg19.gnfU95Distance.target (via knownGeneTxMrna.name)
      hg19.humanHprdP2P.query (via knownGeneTxMrna.name)
      hg19.humanHprdP2P.target (via knownGeneTxMrna.name)
      hg19.humanVidalP2P.query (via knownGeneTxMrna.name)
      hg19.humanVidalP2P.target (via knownGeneTxMrna.name)
      hg19.humanWankerP2P.query (via knownGeneTxMrna.name)
      hg19.humanWankerP2P.target (via knownGeneTxMrna.name)
      hg19.keggPathway.kgID (via knownGeneTxMrna.name)
      hg19.kgAlias.kgID (via knownGeneTxMrna.name)
      hg19.kgColor.kgID (via knownGeneTxMrna.name)
      hg19.kgProtAlias.kgID (via knownGeneTxMrna.name)
      hg19.kgProtMap2.qName (via knownGeneTxMrna.name)
      hg19.kgSpAlias.kgID (via knownGeneTxMrna.name)
      hg19.kgTargetAli.qName (via knownGeneTxMrna.name)
      hg19.kgTxInfo.name (via knownGeneTxMrna.name)
      hg19.kgXref.kgID (via knownGeneTxMrna.name)
      hg19.knownAttrs.kgID (via knownGeneTxMrna.name)
      hg19.knownBlastTab.query (via knownGeneTxMrna.name)
      hg19.knownBlastTab.target (via knownGeneTxMrna.name)
      hg19.knownCanonical.transcript (via knownGeneTxMrna.name)
      hg19.knownCds.name (via knownGeneTxMrna.name)
      hg19.knownGene.name (via knownGeneTxMrna.name)
      hg19.knownGeneMrna.name (via knownGeneTxMrna.name)
      hg19.knownGenePep.name (via knownGeneTxMrna.name)
      hg19.knownGeneTxPep.name (via knownGeneTxMrna.name)
      hg19.knownIsoforms.transcript (via knownGeneTxMrna.name)
      hg19.knownToAllenBrain.name (via knownGeneTxMrna.name)
      hg19.knownToEnsembl.name (via knownGeneTxMrna.name)
      hg19.knownToGnfAtlas2.name (via knownGeneTxMrna.name)
      hg19.knownToHInv.name (via knownGeneTxMrna.name)
      hg19.knownToHprd.name (via knownGeneTxMrna.name)
      hg19.knownToKeggEntrez.name (via knownGeneTxMrna.name)
      hg19.knownToLocusLink.name (via knownGeneTxMrna.name)
      hg19.knownToLynx.name (via knownGeneTxMrna.name)
      hg19.knownToMrna.name (via knownGeneTxMrna.name)
      hg19.knownToMrnaSingle.name (via knownGeneTxMrna.name)
      hg19.knownToMupit.name (via knownGeneTxMrna.name)
      hg19.knownToNextProt.name (via knownGeneTxMrna.name)
      hg19.knownToPfam.name (via knownGeneTxMrna.name)
      hg19.knownToRefSeq.name (via knownGeneTxMrna.name)
      hg19.knownToSuper.gene (via knownGeneTxMrna.name)
      hg19.knownToTag.name (via knownGeneTxMrna.name)
      hg19.knownToTreefam.name (via knownGeneTxMrna.name)
      hg19.knownToU133.name (via knownGeneTxMrna.name)
      hg19.knownToU133Plus2.name (via knownGeneTxMrna.name)
      hg19.knownToU95.name (via knownGeneTxMrna.name)
      hg19.knownToVisiGene.name (via knownGeneTxMrna.name)
      hg19.knownToWikipedia.name (via knownGeneTxMrna.name)
      hg19.mmBlastTab.query (via knownGeneTxMrna.name)
      hg19.rnBlastTab.query (via knownGeneTxMrna.name)
      hg19.scBlastTab.query (via knownGeneTxMrna.name)
      hg19.ucscScop.ucscId (via knownGeneTxMrna.name)
      knownGeneV39.bioCycPathway.kgID (via knownGeneTxMrna.name)
      knownGeneV39.ceBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.dmBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.drBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.foldUtr3.name (via knownGeneTxMrna.name)
      knownGeneV39.foldUtr5.name (via knownGeneTxMrna.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGeneTxMrna.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGeneTxMrna.name)
      knownGeneV39.kgAlias.kgID (via knownGeneTxMrna.name)
      knownGeneV39.kgColor.kgID (via knownGeneTxMrna.name)
      knownGeneV39.kgProtAlias.kgID (via knownGeneTxMrna.name)
      knownGeneV39.kgSpAlias.kgID (via knownGeneTxMrna.name)
      knownGeneV39.kgTargetAli.qName (via knownGeneTxMrna.name)
      knownGeneV39.kgXref.kgID (via knownGeneTxMrna.name)
      knownGeneV39.knownAttrs.kgID (via knownGeneTxMrna.name)
      knownGeneV39.knownBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.knownBlastTab.target (via knownGeneTxMrna.name)
      knownGeneV39.knownCanonical.protein (via knownGeneTxMrna.name)
      knownGeneV39.knownCanonical.transcript (via knownGeneTxMrna.name)
      knownGeneV39.knownCds.name (via knownGeneTxMrna.name)
      knownGeneV39.knownGene.name (via knownGeneTxMrna.name)
      knownGeneV39.knownGeneMrna.name (via knownGeneTxMrna.name)
      knownGeneV39.knownGenePep.name (via knownGeneTxMrna.name)
      knownGeneV39.knownIsoforms.transcript (via knownGeneTxMrna.name)
      knownGeneV39.knownToEnsembl.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToHprd.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToLocusLink.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToMrna.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToMupit.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToPfam.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToRefSeq.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToSuper.gene (via knownGeneTxMrna.name)
      knownGeneV39.knownToTag.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToU133.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToU95.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToVisiGene.name (via knownGeneTxMrna.name)
      knownGeneV39.knownToWikipedia.name (via knownGeneTxMrna.name)
      knownGeneV39.mmBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.rnBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.scBlastTab.query (via knownGeneTxMrna.name)
      knownGeneV39.ucscScop.ucscId (via knownGeneTxMrna.name)

Sample Rows
 
nameseq
uc001aaa.3cttgccgtcagccttttctttgacctcttctttctgttcatgtgtatttgctgtctcttagcccagacttcccgtgtcctttccaccgggcctttgagaggtcacagggtcttgatgctgtggtcttc ...
uc010nxr.1cttgccgtcagccttttctttgacctcttctttctgttcatgtgtatttgctgtctcttagcccagacttcccgtgtcctttccaccgggcctttgagaggtcacagggtcttgatgctgtggtcttc ...
uc010nxq.1cttgccgtcagccttttctttgacctcttctttctgttcatgtgtatttgctgtctcttagcccagacttcccgtgtcctttccaccgggcctttgagaggtcacagggtcttgatgctgtggtcttc ...
uc009vis.3acctacaagatggggtactaacaccacccccaccgcccccaccaccacccccagctcctgaggtgctggccagtgcacccccactcccaccctcaaccgcggcccctgtaggccaaggcgccaggcag ...
uc009vit.3aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...
uc009viu.3aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...
uc001aae.4aaggagatggtgctcttcttttttctttctgaattgtggccaccttcataccagtctgtcatggaacacttaagccgcttgagtgcctgctggtactcccagccctgccatgcctgagccccctgcac ...
uc001aah.4tccggcagagcggaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgc ...
uc009vir.3tccggcagagcggaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgc ...
uc009viq.3tccggcagagcggaagcggcggcgggagcttccgggagggcggctcgcaggcaccatgactcctgtgaggatgcagcactccctggcaggtcagacctatgccgtgcccttcatccagccagacctgc ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.