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Schema for foldUtr3
  Database: hg17    Primary Table: foldUtr3    Row Count: 35,774   Data last updated: 2005-06-06
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000409varchar(255) values mRNA accession
seq AAUGCUCCAGUCACACCUUAUAGGCCC...longblob   mRNA sequence (U's instead of T's)
fold ........((((((((....((((((....longblob   Parenthesis and .'s that describe folding
energy -375.85float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via foldUtr3.name)
      hg17.ccdsKgMap.geneId (via foldUtr3.name)
      hg17.ceBlastTab.query (via foldUtr3.name)
      hg17.dmBlastTab.query (via foldUtr3.name)
      hg17.drBlastTab.query (via foldUtr3.name)
      hg17.dupSpMrna.mrnaID (via foldUtr3.name)
      hg17.foldUtr5.name (via foldUtr3.name)
      hg17.gladHumESDistance.query (via foldUtr3.name)
      hg17.gladHumESDistance.target (via foldUtr3.name)
      hg17.gnfAtlas2Distance.query (via foldUtr3.name)
      hg17.gnfAtlas2Distance.target (via foldUtr3.name)
      hg17.gnfU95Distance.query (via foldUtr3.name)
      hg17.gnfU95Distance.target (via foldUtr3.name)
      hg17.humanHprdP2P.query (via foldUtr3.name)
      hg17.humanHprdP2P.target (via foldUtr3.name)
      hg17.humanVidalP2P.query (via foldUtr3.name)
      hg17.humanVidalP2P.target (via foldUtr3.name)
      hg17.humanWankerP2P.query (via foldUtr3.name)
      hg17.humanWankerP2P.target (via foldUtr3.name)
      hg17.keggPathway.kgID (via foldUtr3.name)
      hg17.kgAlias.kgID (via foldUtr3.name)
      hg17.kgProtAlias.kgID (via foldUtr3.name)
      hg17.kgSpAlias.kgID (via foldUtr3.name)
      hg17.kgTargetAli.qName (via foldUtr3.name)
      hg17.kgXref.kgID (via foldUtr3.name)
      hg17.knownBlastTab.query (via foldUtr3.name)
      hg17.knownBlastTab.target (via foldUtr3.name)
      hg17.knownCanonical.transcript (via foldUtr3.name)
      hg17.knownExpDistance.query (via foldUtr3.name)
      hg17.knownExpDistance.target (via foldUtr3.name)
      hg17.knownGene.name (via foldUtr3.name)
      hg17.knownGeneLink.name (via foldUtr3.name)
      hg17.knownGeneMrna.name (via foldUtr3.name)
      hg17.knownGenePep.name (via foldUtr3.name)
      hg17.knownIsoforms.transcript (via foldUtr3.name)
      hg17.knownToAllenBrain.name (via foldUtr3.name)
      hg17.knownToEnsembl.name (via foldUtr3.name)
      hg17.knownToGnf1h.name (via foldUtr3.name)
      hg17.knownToGnfAtlas2.name (via foldUtr3.name)
      hg17.knownToHInv.name (via foldUtr3.name)
      hg17.knownToHprd.name (via foldUtr3.name)
      hg17.knownToKeggEntrez.name (via foldUtr3.name)
      hg17.knownToLocusLink.name (via foldUtr3.name)
      hg17.knownToPfam.name (via foldUtr3.name)
      hg17.knownToRefSeq.name (via foldUtr3.name)
      hg17.knownToSuper.gene (via foldUtr3.name)
      hg17.knownToU133.name (via foldUtr3.name)
      hg17.knownToU133Plus2.name (via foldUtr3.name)
      hg17.knownToU95.name (via foldUtr3.name)
      hg17.knownToVisiGene.name (via foldUtr3.name)
      hg17.mmBlastTab.query (via foldUtr3.name)
      hg17.rankProp.query (via foldUtr3.name)
      hg17.rankProp.target (via foldUtr3.name)
      hg17.rnBlastTab.query (via foldUtr3.name)
      hg17.scBlastTab.query (via foldUtr3.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr3.name)
      knownGeneV39.ceBlastTab.query (via foldUtr3.name)
      knownGeneV39.dmBlastTab.query (via foldUtr3.name)
      knownGeneV39.drBlastTab.query (via foldUtr3.name)
      knownGeneV39.foldUtr3.name (via foldUtr3.name)
      knownGeneV39.foldUtr5.name (via foldUtr3.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr3.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr3.name)
      knownGeneV39.kgAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgColor.kgID (via foldUtr3.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr3.name)
      knownGeneV39.kgXref.kgID (via foldUtr3.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr3.name)
      knownGeneV39.knownBlastTab.query (via foldUtr3.name)
      knownGeneV39.knownBlastTab.target (via foldUtr3.name)
      knownGeneV39.knownCanonical.protein (via foldUtr3.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr3.name)
      knownGeneV39.knownCds.name (via foldUtr3.name)
      knownGeneV39.knownGene.name (via foldUtr3.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr3.name)
      knownGeneV39.knownGenePep.name (via foldUtr3.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr3.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr3.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr3.name)
      knownGeneV39.knownToHprd.name (via foldUtr3.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr3.name)
      knownGeneV39.knownToMrna.name (via foldUtr3.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr3.name)
      knownGeneV39.knownToMupit.name (via foldUtr3.name)
      knownGeneV39.knownToPfam.name (via foldUtr3.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr3.name)
      knownGeneV39.knownToSuper.gene (via foldUtr3.name)
      knownGeneV39.knownToTag.name (via foldUtr3.name)
      knownGeneV39.knownToU133.name (via foldUtr3.name)
      knownGeneV39.knownToU95.name (via foldUtr3.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr3.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr3.name)
      knownGeneV39.mmBlastTab.query (via foldUtr3.name)
      knownGeneV39.rnBlastTab.query (via foldUtr3.name)
      knownGeneV39.scBlastTab.query (via foldUtr3.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr3.name)

Sample Rows
 
nameseqfoldenergy
AB000409AAUGCUCCAGUCACACCUUAUAGGCCCUAGGCCUGGCCAGGCAUUGUCCCCUGGAAACCUGUGUGGCUAAAGUCUGCUGAGCAGGCAGCAGCCUCUGCUCUGUGGCUCCAUUCAGGCUUUUUCAUCUA ...........((((((((....((((((...)))))).(((((........)))))......))))))))...(((((((((((((((.(.((((.(......).)))).)..((((((((((....... ...-375.85
AB000460AUGAGGACUCCCUGGAGAGGGACACGCGAGAGGCAGGCCAGGCUGCACCACCCCAAGAGCCACGCCCCUCGCUGGCGCCCCAGAGCCGUGGUGCUUGCCAAGGGCUGUGCGGAGCUGGUGCUGCCUGA ...((((.((..((((((.((((.(((((.((.(((((((.(((((.(((((.........((((.((.....))))))((((((.((((.((((....))))..)))).)).)).)).))))).))))). ...-246.11
AB000461AAAUUAUGCAGAAAUGAGGGAAAAGCUUCGCUUACGGCUGACCAAGAGGAAAGAGGAGCAACCUAAAAAAAUGGACCAGAUCUCAGAAAGGGAAAGCGUCGUUGACCAUCGGAGGGUGGAGGAUUUGU ...........((((((.((((((...(((((((((((..(((.(((.........(((.....))).......)))..))).((((.....))))..((((.((((..(((.((.((.(((((.(((((( ...-669.4
AB000463GAUUCCCUGCUCCAGGGUCCUCCCAGGCCGGGAUCAGUUUCCAGCUUCACGCAUGUCCUGGGCUGGGCUCUAUCCAGUGAUGGGCCAUGAGCUGCCCUGGAGGGCCUUCUGCACUAACAGGCAGGGUG .....(((.((((....((((..(((.((((((((...((((..((((..........(((((((((((((.((.....(((.((((...(((((((.((((..((((.....)).))..))))..((((( ...-866.99
AB000781CCGAGCUCGGGCCUGGUGUGGAAUUCCAGAUCCGAAUCCGA..((..((((..((((.........))))..)))).))...-13.7
AB000815AUAUUUUCACCAAGAUGACAUAGGACAUCUUGCAGAAUGUCAUAGGCAAGUUUUACAGACGAGAGAAAAAAUUACAACUAAUUGCUAUAAAUUUAAAAUCAAAGAUGGUUCUUUUAUCACACUACGGA ...(((((((...(((((((........))))))).))))))).........(((((((.((..(((((...(((((....)))))(((((...(((......))).))))))))))..)).......((. ...-32.9
AB001025AUCUGAAUCAAAGAAGCGCGACAAUUCUGGACAGUCAACUUCCCAUGAAAUAAAGUCCCCUUUUUACAGUUCUGCAACAUAUCUGAAAUGUGACAUUUUCUAAAUGCCUCCCUUAAAAAAAAAACUGC .............((((..((((((..(((((((((...(((...(((((...(((((......))))).((..(((((...(((((.....((((....((((...(((((.((((............(( ...-205.84
AB001328GAAGAGUUUACUGGGCAAAAUUGUAUUGAUUUUUUGUUUGUUUUGUUUUGUUUUUAGAAGGAGUCUUGCUCUGUCACCCACGCUGGAGCGCAGUGGCGUGAUCUUGGCUCACUGCAACCUCCACCUCC ...............(((((((((...((.(((.....))).))...)))))))))..(((.(((((((((((((((.......(((((((.((((..(((((((((..((((((((((((((((..((.( ...-275.29
AB001535CUGUGCCCUCAGGCUGGGCGGCUCCAGUCCAUAGACGUUCCCCCCAGAAACCAGGGCUUCUCUCUCCUGAGCCUGGCCAGGACUCAGGCUGUUCCUGGGCCCUGCACAUGAUGGGGUUUGGUGGACCC .....((((.(...(((..(((((((((.(((....)))..........(((.((((((........(((((.((((((.((((.((((((.....)))))).)))).........((((((((.((((.. ...-603.21
AB002292GCAGGACGGCCGCCUUCUGCUGUCAGAAUUUGCAAUCAAGGGUGACUUCUCAGCUAAUCCUACAGCCUGAGUGGUUAAGCUGUGUCUACACUGGUUGGGAAUAAAUUAAAAACAGUAUUUGGGGGAGA ...((((((.((...)))))))).((((((...........(((....)))..((((((.....((((..((((.((((.(((((((....))).))))(((((.((((((.......(((.(((((((.. ...-386.44

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.