Skip to main content
Schema for foldUtr3
  Database: hg16    Primary Table: foldUtr3    Row Count: 37,250   Data last updated: 2004-04-07
Format description: Info about folding of RNA into secondary structure
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name AB000099varchar(255) values mRNA accession
seq AGGCAUAAACCACAUCCAGCCACCUCC...longblob   mRNA sequence (U's instead of T's)
fold ..((....(((((..........((((...longblob   Parenthesis and .'s that describe folding
energy -207.3float range Estimated free energy of folding (negative)

Connected Tables and Joining Fields
        hg16.bioCycPathway.kgID (via foldUtr3.name)
      hg16.dmBlastTab.query (via foldUtr3.name)
      hg16.drBlastTab.query (via foldUtr3.name)
      hg16.dupSpMrna.mrnaID (via foldUtr3.name)
      hg16.foldUtr5.name (via foldUtr3.name)
      hg16.gnfAtlas2Distance.query (via foldUtr3.name)
      hg16.gnfAtlas2Distance.target (via foldUtr3.name)
      hg16.gnfU95Distance.query (via foldUtr3.name)
      hg16.gnfU95Distance.target (via foldUtr3.name)
      hg16.hg17Kg.name (via foldUtr3.name)
      hg16.keggPathway.kgID (via foldUtr3.name)
      hg16.kgAlias.kgID (via foldUtr3.name)
      hg16.kgProtAlias.kgID (via foldUtr3.name)
      hg16.kgXref.kgID (via foldUtr3.name)
      hg16.knownBlastTab.query (via foldUtr3.name)
      hg16.knownBlastTab.target (via foldUtr3.name)
      hg16.knownCanonical.transcript (via foldUtr3.name)
      hg16.knownGene.name (via foldUtr3.name)
      hg16.knownGeneLink.name (via foldUtr3.name)
      hg16.knownGeneMrna.name (via foldUtr3.name)
      hg16.knownGenePep.name (via foldUtr3.name)
      hg16.knownIsoforms.transcript (via foldUtr3.name)
      hg16.knownToEnsembl.name (via foldUtr3.name)
      hg16.knownToGnfAtlas2.name (via foldUtr3.name)
      hg16.knownToHInv.name (via foldUtr3.name)
      hg16.knownToLocusLink.name (via foldUtr3.name)
      hg16.knownToPfam.name (via foldUtr3.name)
      hg16.knownToRefSeq.name (via foldUtr3.name)
      hg16.knownToSuper.gene (via foldUtr3.name)
      hg16.knownToU133.name (via foldUtr3.name)
      hg16.knownToU95.name (via foldUtr3.name)
      hg16.scBlastTab.query (via foldUtr3.name)
      knownGeneV39.bioCycPathway.kgID (via foldUtr3.name)
      knownGeneV39.ceBlastTab.query (via foldUtr3.name)
      knownGeneV39.dmBlastTab.query (via foldUtr3.name)
      knownGeneV39.drBlastTab.query (via foldUtr3.name)
      knownGeneV39.foldUtr3.name (via foldUtr3.name)
      knownGeneV39.foldUtr5.name (via foldUtr3.name)
      knownGeneV39.gnfAtlas2Distance.query (via foldUtr3.name)
      knownGeneV39.gnfAtlas2Distance.target (via foldUtr3.name)
      knownGeneV39.kgAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgColor.kgID (via foldUtr3.name)
      knownGeneV39.kgProtAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgSpAlias.kgID (via foldUtr3.name)
      knownGeneV39.kgTargetAli.qName (via foldUtr3.name)
      knownGeneV39.kgXref.kgID (via foldUtr3.name)
      knownGeneV39.knownAttrs.kgID (via foldUtr3.name)
      knownGeneV39.knownBlastTab.query (via foldUtr3.name)
      knownGeneV39.knownBlastTab.target (via foldUtr3.name)
      knownGeneV39.knownCanonical.protein (via foldUtr3.name)
      knownGeneV39.knownCanonical.transcript (via foldUtr3.name)
      knownGeneV39.knownCds.name (via foldUtr3.name)
      knownGeneV39.knownGene.name (via foldUtr3.name)
      knownGeneV39.knownGeneMrna.name (via foldUtr3.name)
      knownGeneV39.knownGenePep.name (via foldUtr3.name)
      knownGeneV39.knownIsoforms.transcript (via foldUtr3.name)
      knownGeneV39.knownToEnsembl.name (via foldUtr3.name)
      knownGeneV39.knownToGnfAtlas2.name (via foldUtr3.name)
      knownGeneV39.knownToHprd.name (via foldUtr3.name)
      knownGeneV39.knownToLocusLink.name (via foldUtr3.name)
      knownGeneV39.knownToMrna.name (via foldUtr3.name)
      knownGeneV39.knownToMrnaSingle.name (via foldUtr3.name)
      knownGeneV39.knownToMupit.name (via foldUtr3.name)
      knownGeneV39.knownToPfam.name (via foldUtr3.name)
      knownGeneV39.knownToRefSeq.name (via foldUtr3.name)
      knownGeneV39.knownToSuper.gene (via foldUtr3.name)
      knownGeneV39.knownToTag.name (via foldUtr3.name)
      knownGeneV39.knownToU133.name (via foldUtr3.name)
      knownGeneV39.knownToU95.name (via foldUtr3.name)
      knownGeneV39.knownToVisiGene.name (via foldUtr3.name)
      knownGeneV39.knownToWikipedia.name (via foldUtr3.name)
      knownGeneV39.mmBlastTab.query (via foldUtr3.name)
      knownGeneV39.rnBlastTab.query (via foldUtr3.name)
      knownGeneV39.scBlastTab.query (via foldUtr3.name)
      knownGeneV39.ucscScop.ucscId (via foldUtr3.name)

Sample Rows
 
nameseqfoldenergy
AB000099AGGCAUAAACCACAUCCAGCCACCUCCUUCUGAUCAGCAGCAAAGCUGACGUUUUGAUCUCCAUCUGUCUGAUUCUUGUGUCUACUUCUCAGUUUACAACUCCAGUGGGAAAGAAAGAGCUUUAUUUA .....((....(((((..........((((((....(((((......)))))......((((((..(((((((..(((((((.(((...(((((((.......(((((..(((.................( ...-207.3
AB000114CAAGAAACUAUAUAGGUAUACACUUACGACUUCACAAAACCUAUACUUAAUAUAGUAAAUCUAAGUAAACAUGUAUUACUCAAAGUAAUAUAUUUAGAAUUAUGUAUUAGUAUAAGAUCAGAAUUGAA ......((((..((.(((((...((((.(((((((.........((((((.((((((.(((.(((((......(((((((((.....)))))))))))))).)))))))))))))))...((......)). ...-182.42
AB000115GAUAAGUUGCCUUGAUUCUGACAUUUGGCCCAGCCUGUACUGGUGUGCCGCAAUGAGAGUCAAUCUCUAUUGACAGCCUGCUUCAGAUUUUGCUUUUGUUCGUUUUGCCUUCUGUCCUUGGAACAGUC ........(((((((.((((((..((((((((...(((......)))..)))).)))))))))).(((((..(((.(((.(((((((.......((....))..((((((((((.((..((((((...... ...-138.8
AB000220UAUUUUCUUAUGUGGGUCUUAUGCUUCCAUUAACAAAUGCUCUGUCUUCAAUGAUCAAAUUUUGAGCAAAGAAACUUGUGCUUUACCAAGGGGAAUUACUGAAAAAGGUGAUUACUCCUGAAGUGAGU .......(((.(((((..((((..((((..(((((.((.((((((..(((((..((.(((.....))).))..(((((((..(((((....((((((((((((......))))))).)))))))))))))) ...-509.36
AB000277GCGCCCCGCAGCCCGGCCGCCGCCGCCAAGCAUCUGUCCCCUCCUCCCCCGGCCGCUCCUCUGCCGGCUGCCUCUCCCCCUCCGAGCCCGUCCGCUCCCGAGCUCGGUGACUUCCACUGUCGCGGUGU ...(((....((((((.(((.((.((((........................)))).))......)))))))))............((((......)))).((((((((((((........(.((.((((. ...-87.86
AB000449UUCAGAUGCUGUGAACCAGAUUUCCUUUUCUUUGUUUUCUUUUGACUUUUUUCUCCUUUUCUAUUUGAACUGUUUUAUUUUCCUGUGAGUCUUGCGAGGUGGAAGUAAUGAUUAAAUACUCAUGUGUU .........(((.(....)...((((((((..(((((((.......(((.(((((.(((..((((.(((((((........(((((.....(.....).....)))))..((((........))))..))) ...-66.42
AB000459AUGAGGACUCCCUGGAGAGGGACACGCGAGAGGCAGGCCAGGCUGCACCACCCCAAGAGCCACGCCCCUCGCUGGCGCCCCAGAGCCGUGGUGCUUGCCAAGGGCUGUGCGGAGCUGGUGCUGCCUGA ...((((.((..((((((.((((.(((((.((.(((((((.(((((.(((((.........((((.((.....))))))((((((.((((.((((....))))..)))).)).)).)).))))).))))). ...-246.11
AB000460AUGAGGACUCCCUGGAGAGGGACACGCGAGAGGCAGGCCAGGCUGCACCACCCCAAGAGCCACGCCCCUCGCUGGCGCCCCAGAGCCGUGGUGCUUGCCAAGGGCUGUGCGGAGCUGGUGCUGCCUGA ...((((.((..((((((.((((.(((((.((.(((((((.(((((.(((((.........((((.((.....))))))((((((.((((.((((....))))..)))).)).)).)).))))).))))). ...-246.11
AB000461AAAUUAUGCAGAAAUGAGGGAAAAGCUUCGCUUACGGCUGACCAAGAGGAAAGAGGAGCAACCUAAAAAAAUGGACCAGAUCUCAGAAAGGGAAAGCGUCGUUGACCAUCGGAGGGUGGAGGAUUUGU ...........((((((.((((((...(((((((((((..(((.(((.........(((.....))).......)))..))).((((.....))))..((((.((((..(((.((.((.(((((.(((((( ...-669.4
AB000462UGGCAGUCCAUGUGGCUGCCAGGCCAAGGCAGUCACAGGGGCCCUGACCCCAGGCCACACAGACGGACAUGGGCCCACAUGGGAGGGUGAGCAGGAGCAAGGCUGUGCUUGCCUAGGGCCUCUGUGAU ....((((((((.((((((((((.......))))))))))..((((.((....))))))........)))).(((((....(((((((((..((..(((((.((((...((((((((.(((..((((.((( ...-2213.1

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.