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Schema for bdgpGenePep
  Database: dm1    Primary Table: bdgpGenePep    Row Count: 18,746   Data last updated: 2005-01-09
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name CG11023-RAvarchar(255) values Name of gene - same as in genePred
seq MGERDQPQSSERISIFNPPVYTQHQVR...longblob   Peptide sequence

Connected Tables and Joining Fields
        dm1.arbExpDistance.query (via bdgpGenePep.name)
      dm1.arbExpDistance.target (via bdgpGenePep.name)
      dm1.bdgpBlastTab.query (via bdgpGenePep.name)
      dm1.bdgpBlastTab.target (via bdgpGenePep.name)
      dm1.bdgpCanonical.transcript (via bdgpGenePep.name)
      dm1.bdgpGene.name (via bdgpGenePep.name)
      dm1.bdgpIsoforms.transcript (via bdgpGenePep.name)
      dm1.bdgpSwissProt.bdgpName (via bdgpGenePep.name)
      dm1.bdgpToCanonical.name (via bdgpGenePep.name)
      dm1.bdgpToLocusLink.name (via bdgpGenePep.name)
      dm1.bdgpToPfam.name (via bdgpGenePep.name)
      dm1.bdgpToRefSeq.name (via bdgpGenePep.name)
      dm1.blastFBPep00.name (via bdgpGenePep.name)
      dm1.drBlastTab.query (via bdgpGenePep.name)
      dm1.fbTranscript.transcriptId (via bdgpGenePep.name)
      dm1.hgBlastTab.query (via bdgpGenePep.name)
      dm1.pscreen.geneIds (via bdgpGenePep.name)
      dm1.scBlastTab.query (via bdgpGenePep.name)

Sample Rows
 
nameseq
CG11023-RAMGERDQPQSSERISIFNPPVYTQHQVRNEAPYIPTTFDLLSDDEESSQRVANAGPSFRPLTYSDAVRLSQNGFANSRVSGHSSYTVRRPPALVDRSILSQEMERMDQEQYIYLIRTAAQSNSVGSHYA ...
CG2671-RAMLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKL ...
CG2671-RBMLKFIRGKGQQPSADRQRYITAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCC ...
CG2671-RCMLKFIRGKGQQPSADRHRLQKDLFAYRKTAQHGFPHKPSALAYDPVLKLMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKL ...
CG2671-RDMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIYHDVVLEQVP ...
CG2671-REMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIYHDVVLEQVP ...
CG2671-RFMAIGTQTGALKVFGQPGVELYGQHTLLNNSASELNVQLLEWVYGTGRILSLTAANQLILWEPVGATLLPIKTLPFDGKLKKVSSLCCSLSKDLLWIGTEGGNIYQLDLHTFTIKEPVIYHDVVLEQVP ...
CG2657-RAMRFTQERPYVLYTHKLYADGLGSNTPVVLTSWIKGALSRPHINLFPSKFQFGFAGHRFQISAANQPPFIFRIRTLDSSGMGQLRWDGVEFRLLTMISKRLNFSIDITETPTRSNTRGVVDTIQEQIIE ...
CG31973-RAMKYSTSRINILCLLGLCLLLFKTAPTEAQNKRTSRVTSSRSFGTNIKTDTSNGPSFDCPEEFGYYPHPSDCTQYYVCVFGGALLESCTGGLMYSHDLQTCDWPRNVGCELADTSSERNLAQSQVQRQR ...
CG31973-RBMYQILELTPTEAQNKRTSRVTSSRSFGTNIKTDTSNGPSFDCPEEFGYYPHPSDCTQYYVCVFGGALLESCTGGLMYSHDLQTCDWPRNVGCELADTSSERNLAQSQVQRQREPHAQHVPSRVRFGAA ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.