Skip to main content
Schema for sangerPep
  Database: ce4    Primary Table: sangerPep    Row Count: 23,224   Data last updated: 2007-07-31
Format description: A predicted peptide - linked to a predicted gene.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name 2L52.1varchar(255) values Name of gene - same as in genePred
seq MSMVRNVSNQSEKLEILSCKWVGCLKS...longblob   Peptide sequence

Connected Tables and Joining Fields
        ce4.kimExpDistance.query (via sangerPep.name)
      ce4.kimExpDistance.target (via sangerPep.name)
      ce4.mmBlastTab.query (via sangerPep.name)
      ce4.orfToGene.name (via sangerPep.name)
      ce4.sangerBlastTab.query (via sangerPep.name)
      ce4.sangerBlastTab.target (via sangerPep.name)
      ce4.sangerCanonical.transcript (via sangerPep.name)
      ce4.sangerGene.name (via sangerPep.name)
      ce4.sangerGeneToWBGeneID.sangerGene (via sangerPep.name)
      ce4.sangerIsoforms.transcript (via sangerPep.name)
      ce4.sangerLinks.orfName (via sangerPep.name)
      ce4.sangerToRefSeq.name (via sangerPep.name)

Sample Rows
 
nameseq
2L52.1MSMVRNVSNQSEKLEILSCKWVGCLKSTEVFKTVEKLLDHVTADHIPEVIVNDDGSEEVVCQWDCCEMGASRGNLQKKKEWMENHFKTRHVRKAKIFKCLIEDCPVVKSSSQEIETHLRISHPINPKK ...
2RSSE.1MTVASYSMVLCGSSDDHRYRGRIEKVKFGVPINEAFAHDIPATLLMLLLKVNKDGPAKKDIWRAPGNQAQVRKLSQVMQHGRLVNIENFTVYTAASVIKKFLSKLPNGIFGRDNEETLFNSASTGMDI ...
2RSSE.2MRVPTIQENEPMRNQPSTSRATTKPMPTMARLNNRLSSSVGEVLIEGISDVEELSDLDIIRPLTACGGDRSLSYLQYVHENQARRMRSRSEWFLSPVSNAKKTSSKSVDYFGPVTIEENPKPTPLPKP ...
3R5.1MFSPLECRLAVACKFQDDRYYKLFHQYFDLLAQVHSVVETMDGLWMLRVWRAQKFGPESIKERRERQLFHVTQFSFKRYIVPPNPRIGKAIEEFGKEYLIEINVYDEHRADLVSLNSGNFVAIQNVHA ...
4R79.1aMLDHVLLLTYCLVSTVVRSQPSADVFRSFAGYIPEDHRVTHHEWQNSGKFQGDIDGVDPNLLKLPEGPVLFNALKNKQLTWEGGVIPYEMDTAFSPNEIKILEKAFDSYRRTTCIRFEKREGQTDYLN ...
4R79.1bMHSVGFWHEHSRADRDDHIKINWDNILPGMKSQFDKISAVLQDLQGENYDYKSIMHYDSTAFSRNGRNTIETVENGFTQVIGTAMDLSPLDIVKINKLYSCKTKKKEKVKPATTEEPHQLIPQVVDKN ...
4R79.2MEVESATNSSSEESIFHEQTRKLFRLCDTKHIGLIGQSDLETLVDLIPQDDLHKIARFIGDQKVNEQAFCRILKAIVNQSLQQNMAKNEVEIPCILDKSQYLEESSLEDEMREIEQNKSYLDDPLTKI ...
6R55.1aMIKVIFHLVSAVLYAAVCYRDTTIVTGALLPIPYQTWSRFVWLTIIDLYMQLLYHTIGFILAVVSPNKRHIIFDYWARALTGPIGVAVTVLFWGLFLFDPATLARDEMAMKILTLFWFNHGLHTLPAI ...
6R55.1bMIKVIFHLVSAVLYAAVCYRDTTIVTGALLPIPYQTWSRFVWLTIIDLYMQLLYHTIGFILAVVSPNKRHIIFDYWARALTGPIGVAVTVLFWGLFLFDPATLARDEMAMKILTLFWFNHGLHTLPAI ...
6R55.2MLTPAVAGESDPTGENGEMCVRAEDTELGRAADDDERCRGNNSTHLDKSNHNSPITSHFLKRDATLYLSTDYTVTNWKGDGSPLSFSRVDKEYTYTHTHTLSHTTSLSIFFLTFSSVSSFVHFRKKMY ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.